Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22190 206 / 1e-61 IQD5 IQ-domain 5 (.1.2) AT2G26180 111 / 1e-26 IQD6 IQ-domain 6 (.1) AT1G72670 76 / 2e-14 IQD8 IQ-domain 8 (.1) AT3G15050 66 / 8e-12 IQD10 IQ-domain 10 (.1) AT3G09710 65 / 4e-11 IQD1 IQ-domain 1 (.1.2) AT5G03040 65 / 6e-11 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 59 / 3e-09 IQD3 IQ-domain 3 (.1) AT3G49260 55 / 8e-08 IQD21 IQ-domain 21 (.1.2.3) AT4G00820 54 / 2e-07 IQD17 IQ-domain 17 (.1) AT2G33990 52 / 4e-07 IQD9 IQ-domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013362 [exp] 578 / 0 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 96 / 4e-21 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10036508 [exp] 64 / 2e-10 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 62 / 4e-10 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10015300 [exp] 59 / 2e-09 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10025425 [exp] 59 / 3e-09 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10014870 [exp] 59 / 7e-09 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10015067 [exp] 56 / 2e-08 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 57 / 3e-08 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215200 [exp] 345 / 7e-115 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 289 / 5e-93 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 115 / 7e-28 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 80 / 1e-16 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G375700 [exp] 77 / 3e-15 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.016G086300 [exp] 73 / 1e-13 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.011G096500 [exp] 72 / 1e-13 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.003G042700 [exp] 72 / 2e-13 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.004G053000 [exp] 70 / 4e-13 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G131100 [exp] 71 / 6e-13 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10004107 pacid=23147809 polypeptide=Lus10004107 locus=Lus10004107.g ID=Lus10004107.BGIv1.0 annot-version=v1.0 ATGGGGTTCTCAGGAAAATGGATTAAAGCATTGGTTGGGATGAAGAAGTCAGATAAGTTCCAGTCCTCCGAGAAAGTTGAAAATGTTAGTACTAAGAAAA CTGCTGGCAGCACATTTCGTCATCGGAGAAAGCACTTGGTGGATATCGGTGCTGATACACTTCAGTTGGAATTCAATCATAATGTTGCAGTGATGACTGG TGACACTGTTCCAGAGGCTTCAGAATCTCCTGCTACTTCTGGTGAGCTGCAGGATGCAAATGATACTCGACAGATCCTGCAGGAAGAATGGGCTTCCATT CGCATTCAAACAGCATTCCGAGGTTTTCTGGCGAGAAGAGCTCTGCGTGCTTTAAAAGGGTTAGTAAGACTTCAAGCCCTTGTCAGAGGCCATGCTGTAA GAAAGCAAGCTGCCATAACTCTTCGCTGCATGCAAGCTTTGGTAAGGGTTCAGGCTCGCGTAAGAGCACGACGTGTTCGTTTGGCATTGGAGGATCAAAC ATCTCAACAAAAGTTTCAGCAACAGCTTGCAGATGAGGCACGAGTTCGAGAAATTGAAATATCTGTCTGCATATGTCTGCTATCAGATACAGAAGACATG TGGACTGGTCTTTTAGCTACTTTCTGTACTACATATGAAAAGCATAAGGAAGGGTGGTGTGATGGTATAGGTTCTGTTGAACAAATTCAAGCAAAGTTAC TGCAGCGACAGGAAGCTGCAGCTAAGCGGGAGAGAGCCATGGCGTATGCTCTTGCCCATCAGTGGCAGGCAGGGTCAAGACAGCAGGCTGCTCACTCAGG TTTTATACCGGATAAGAACAGCTGGGGTTGGAATTGGTTGGAGAGATGGATGGCTGTCCGTCCATGGGAGAACCGGTTTCTCGACATACGTGACGGGGTC ATGGTGGCTGATGAGAACGGACCAGACGATAATAACAATAGCAACAGCAACGGCAGAACACAACAAGTGAAGCCTACAATATCTGGAAAGAAGAAACCAA ATGTGCAGAAGCCAAATGGTTCGAGTCAGAAAGCGGGTCCTTCTCATTCTGAAGGTCCAAGTAATAATTCACCACAAACAAGCAAATCAGCTGGAGGCGT GATGGAGGCAACTTCAAACACACATTCTTCTACTAAGAAGCTGAATTCGAAACCAAAGCTAGCTTTGGGAGAGGCTGCTGATGAAAGTAAAGCTCGAACC GGGATTCCCCAACGATCGCTCAGCAACCCGAAGGAGAGAACCAGTCGAGCTGATCAGCCTGCTAAAAAGAGGCTGTCTCTTCCCAATAAAGGGGGCGATC CGGCCAAGCAAGGCATCAGACCAAATGCTGCAGCCAGTAGAGTTTCACCTACTGCTGCTATAATCAAGAAGGGAAAACCGGAGTCGAATAACAGCAAGTC CAGCCATTGA
AA sequence Show only first row Show all	>Lus10004107 pacid=23147809 polypeptide=Lus10004107 locus=Lus10004107.g ID=Lus10004107.BGIv1.0 annot-version=v1.0 MGFSGKWIKALVGMKKSDKFQSSEKVENVSTKKTAGSTFRHRRKHLVDIGADTLQLEFNHNVAVMTGDTVPEASESPATSGELQDANDTRQILQEEWASI RIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALEDQTSQQKFQQQLADEARVREIEISVCICLLSDTEDM WTGLLATFCTTYEKHKEGWCDGIGSVEQIQAKLLQRQEAAAKRERAMAYALAHQWQAGSRQQAAHSGFIPDKNSWGWNWLERWMAVRPWENRFLDIRDGV MVADENGPDDNNNSNSNGRTQQVKPTISGKKKPNVQKPNGSSQKAGPSHSEGPSNNSPQTSKSAGGVMEATSNTHSSTKKLNSKPKLALGEAADESKART GIPQRSLSNPKERTSRADQPAKKRLSLPNKGGDPAKQGIRPNAAASRVSPTAAIIKKGKPESNNSKSSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10004107 [exp]	0	1
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	7.6	0.8189
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	17.9	0.8075
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	21.5	0.8079
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	30.6	0.7872
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	40.7	0.8020
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	51.1	0.7260
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	75.8	0.7807
					Lus10041110 [exp]	89.3	0.7789
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	90.1	0.7730
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	91.6	0.7743

Compare expression of checked genes

Lus10004107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.