Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03140 193 / 2e-52 Tudor/PWWP/MBT superfamily protein (.1) AT3G21295 156 / 4e-40 Tudor/PWWP/MBT superfamily protein (.1) AT1G51745 134 / 4e-33 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013363 [exp] 1110 / 0 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1) Lus10037614 [exp] 162 / 7e-42 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1) Lus10006874 [exp] 153 / 1e-38 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048100 [exp] 251 / 4e-73 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G081400 [exp] 223 / 5e-63 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1) Potri.001G193900 [exp] 174 / 9e-46 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.003G045600 [exp] 173 / 2e-45 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.012G081500 [exp] 44 / 0.0004 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004108 pacid=23147813 polypeptide=Lus10004108 locus=Lus10004108.g ID=Lus10004108.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCCGAATCAGGCGGCGCACTTGATGCCGGAGCAGGTCCGATCGTCTGGGTGCGGAGGAGGAACGGATCCTGGTGGCCCGGTAAGATACTTA GTCCTGACGAGCTTGCAGAGTGTAATCTTACGTCTCCTAGGGCCGGCACTCCAGTCAAGCTCCTTGGAAGAGACGACGCTAGTGTGGATTGGTATAATTT AGAGAAGTCTAAGCGTGTGAAGCCATTCAGATGCGGAGACTTTGATGAATGCATTGAAAAGGCTGAATCTACCCATGGTATACCGATTAAGAAAAGAGAG AAATATGCTCGCCGCGAAGATGCTATTCTTCATGCTATTGAGCTCGAAAGGAAACTGCTAGCAAGTAAAGTTTTGGATGATGATCATTCTGGTGAGATGC CACGAATGAGGGACTTGAAGGATTTCGGGCTTACAGCTCCTATTCGGAAGCGAAAGCTCTCGCTTTCTGTTGACTTGGATAGCAGGAAGTCTAGTCCAGA AAACCTACTCCCTGGTAACAGTGTCCTTAGCACTGACAGAGCCGGCGATTCAAATGGAGGAACTTTTTTCTGTGATTTGCTTTACCTCCCAGCTGAGTGT GGTGACTTGATGGATGATAAAGACCTTCCTTCAGGACAGGTTAAGATACTTCCCATAGATGTGTACCCTTCTAAGTTCGATGAGAATGGTGGTCATCCTC ACCAAGGTTCACTGAATGAGCGAAACTCTTCGTCTGATTACATGCAAGATATGGAGCAGAATTCTTCTGGATCTGATTCTTCCGAGTCTGATTCATCTGC TACTGAACCAAAAATGAAAAATGGGTTGGCTGTTTTTTCAGATTGCCCAGAACCACACAGAGAACTGGAAACTACGAGCAGCGAGGAAACCGACGACTCA GCATTTTCTGGTCGCACTCATCCTTACTACCTCGACGACCCTTACCGTTCTAACGAGGCAGAGTCCATATGGCAATGGAGAGGGAAACAAGACACACGTC ATCTTATCAGAAAGCCTCTGGAAAGAGCCAAAGTAAAGTTCTCACATCCTTACAGAACCACCGGAACCACTCTTCGGTCATATCATGACAGTGATGATGA TAACGACGATAACGACGATAATGACGCCCATAACGAATTCGAGTCACGACGTTTCAGATCTCAAAAGAGCGGACTTGGTGGTCACCGGAGTACTATCGGT CTTAATAGGACTCGGTGGGAGGACATAACGTGGGAGGATCGTCCAGCTTTCAGGGGATGCTGCAAAGTCAGGGGCCAGCATTTCACTCATCAAACTTTCG GCGGTCGAACAGGTTTCATGTTAATTGATGTCGATTTAAAGGTTCAAGCGAGCTACCAAAAGGAACCTTCCGTTCCCATCGTATCCCTAAGGAGCAAAGT AGGCAGGAGGGCAGTAATCGGCCACCCGATCAAAGTCGAACCACTCGAGTACGGCTCGGCCGATGCCCTCGTGGCTTCAACCAGCGACCACTGCAGCAGC GAGACGACAGTCGAACACGAGAGGAGCCCAGCAGTACTTAAACCGTCATGGAGAACTGCACGGAGAACGAATTCTCGGGTCCCACGGCCACACGTGGCAA TAGCACCGACGTTCAAGAAGTCAGGCCATGTGGCGGTTTTGAATCGGAGAGGGGCGGCCGTGGCTCCGCCTTGGATGATGCCGAGGAAAGTCGGGAAGAA ATCGAGTCTGTCGTCGAACCAGAAGACGAGGATGCTGTCGTCGATTGGGTTCAGTAAGGTCACCAGCAGCGGGAGCAGCAGTAGCGGCAGCCAAATGGGC CAAATGGAAGGGGTGATGAAGGGGGAGACGTCGGTGGTGGGAATGATGACGACGGTGGCGTGCATACCGGTGAAGTTGGTGTTCAGTAGGTTGCTGGAGA AGATAAACCGGCCGCCTTCGAAAGCAGCAGTCAGTAGTAAACCTCCGGTGGCGCCTTTGCCGCCACCGGAATCAAGTAGTTGTGGTAGGATGGATACGGA AGTGCAAGTACAGCAGGATGAGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10004108 pacid=23147813 polypeptide=Lus10004108 locus=Lus10004108.g ID=Lus10004108.BGIv1.0 annot-version=v1.0 MGSSESGGALDAGAGPIVWVRRRNGSWWPGKILSPDELAECNLTSPRAGTPVKLLGRDDASVDWYNLEKSKRVKPFRCGDFDECIEKAESTHGIPIKKRE KYARREDAILHAIELERKLLASKVLDDDHSGEMPRMRDLKDFGLTAPIRKRKLSLSVDLDSRKSSPENLLPGNSVLSTDRAGDSNGGTFFCDLLYLPAEC GDLMDDKDLPSGQVKILPIDVYPSKFDENGGHPHQGSLNERNSSSDYMQDMEQNSSGSDSSESDSSATEPKMKNGLAVFSDCPEPHRELETTSSEETDDS AFSGRTHPYYLDDPYRSNEAESIWQWRGKQDTRHLIRKPLERAKVKFSHPYRTTGTTLRSYHDSDDDNDDNDDNDAHNEFESRRFRSQKSGLGGHRSTIG LNRTRWEDITWEDRPAFRGCCKVRGQHFTHQTFGGRTGFMLIDVDLKVQASYQKEPSVPIVSLRSKVGRRAVIGHPIKVEPLEYGSADALVASTSDHCSS ETTVEHERSPAVLKPSWRTARRTNSRVPRPHVAIAPTFKKSGHVAVLNRRGAAVAPPWMMPRKVGKKSSLSSNQKTRMLSSIGFSKVTSSGSSSSGSQMG QMEGVMKGETSVVGMMTTVACIPVKLVFSRLLEKINRPPSKAAVSSKPPVAPLPPPESSSCGRMDTEVQVQQDEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	0	1
AT5G08450			unknown protein		Lus10019217 [exp]	3.0	0.9136
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	4.8	0.9204
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	7.5	0.9163
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	10.5	0.9122
AT3G55550			Concanavalin A-like lectin pro...		Lus10024365 [exp]	12.1	0.8408
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	12.5	0.8920
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	14.1	0.9125
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	16.9	0.8806
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	18.9	0.9021
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	20.2	0.9050

Compare expression of checked genes

Lus10004108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.