Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 486 / 7e-172 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 480 / 2e-169 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 118 / 6e-30 ATERDJ3B DNAJ heat shock family protein (.1) AT3G47940 100 / 2e-23 DNAJ heat shock family protein (.1) AT2G20560 96 / 5e-22 DNAJ heat shock family protein (.1) AT2G20550 94 / 9e-22 HSP40/DnaJ peptide-binding protein (.1.2) AT1G59725 92 / 8e-21 DNAJ heat shock family protein (.1) AT3G08910 91 / 3e-20 DNAJ heat shock family protein (.1) AT1G10350 91 / 6e-20 DNAJ heat shock family protein (.1) AT4G28480 89 / 6e-20 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028188 [exp] 408 / 6e-141 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 401 / 4e-138 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 357 / 2e-122 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10008652 [exp] 305 / 2e-102 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 305 / 2e-102 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10032100 [exp] 110 / 6e-27 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 108 / 2e-26 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 97 / 3e-22 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10036668 [exp] 94 / 3e-21 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015700 [exp] 550 / 0 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 538 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 530 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 418 / 4e-145 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 234 / 1e-74 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 153 / 9e-45 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.002G198000 [exp] 115 / 7e-29 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 115 / 7e-29 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 100 / 1e-23 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 98 / 1e-22 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004109 pacid=23147802 polypeptide=Lus10004109 locus=Lus10004109.g ID=Lus10004109.BGIv1.0 annot-version=v1.0 ATGTTCGGCAGAGCGCCTAAGAAGAGCGACAACACCAAGTATTATGAGATACTGGGTGTGCCCAAGACCGCGTCGCCGGAGGATCTGAAGAAGGCGTACC GCAAGGCCGCGATCAAGCATCATCCCGACAAGGGAGGCGAGCCCGAGACGGTAAAAAGATCGTTGTGTGGTGGAGGCGGCCATAACCCGTTTGATATTTT TGAATCCTTCTTCGGTGGTGGTGCTTTTGGAGGTGGTAGTAGCAGGGGAAGGAGGCAGAGAAGGGGAGAAGACGTAGTTCATCCATTGAAGGTTTCCTTG GAAGATCTTTACTTGGGTACAACCAAGAAGCTCTCACTGTCCCGGAATGTGATCTGCTCCAAGTGCAGTGGCAAAGGATCAAAGTCTGGAGCTTCGATGA AGTGCGCTGGCTGCCAAGGCAGTGGAATGAAGGTTTCAATAAGGCAACTCGGTCCTGGGATGATTCAACAAATGCAACACCCGTGTAACGAATGCAAAGG TACTGGCGAATCCATAAGTGACAAGGATCGCTGCTCACAGTGCAAAGGTGAGAAGGTTGTGCCGGAGAAGAAGGTCCTTGAAGTTCATGTGGAGAAGGGA ATGCAGAATGGACAAAAGATTACTTTCCCTGGTGAAGCTGATGAAGCGCCTGAAACTATCACTGGAGATATAGTTTTCGTCCTTCAACAAAAAGAGAACC CTAGGTTTAAGAGAAAGGGTGACGATTTATTTGTGGAACACTCACTGCCTCTTACTGAAGCTCTGTGTGGCTTCCGTTTTGTTCTTACTCACTTGGATGG CAGGCAGCTTCTGATTAAGTCCCTTCCTGGTGAAGTTGTCAAGCCTGATTCATTCAAGGCAATAAACGACGAGGGAATGCCGATGTACCAGAAGCCATTC CTCAAGGGCAAGCTGTACATCCACTTCACCGTTGACTTCCCAGATTCACTCTCCCCCGACCAAGTCAAGGCACTTGAAGCCATCCTGCCCGCGAAATCAT CGAGCCGCTTGACAGACATGGAGATCGACGAGTGCGAGGAGACCACCATGCACGATGTGAACATCGAAGAGGAGATGAGGAGGAAGCAGCAGCAGTCTCG TCACGAGGCATACGACGAGGAGGACGAGGATATGCCAGGTGGCGCCCAGAGAGTGCAGTGCGCCCAGCAGTAG
AA sequence Show only first row Show all	>Lus10004109 pacid=23147802 polypeptide=Lus10004109 locus=Lus10004109.g ID=Lus10004109.BGIv1.0 annot-version=v1.0 MFGRAPKKSDNTKYYEILGVPKTASPEDLKKAYRKAAIKHHPDKGGEPETVKRSLCGGGGHNPFDIFESFFGGGAFGGGSSRGRRQRRGEDVVHPLKVSL EDLYLGTTKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGESISDKDRCSQCKGEKVVPEKKVLEVHVEKG MQNGQKITFPGEADEAPETITGDIVFVLQQKENPRFKRKGDDLFVEHSLPLTEALCGFRFVLTHLDGRQLLIKSLPGEVVKPDSFKAINDEGMPMYQKPF LKGKLYIHFTVDFPDSLSPDQVKALEAILPAKSSSRLTDMEIDECEETTMHDVNIEEEMRRKQQQSRHEAYDEEDEDMPGGAQRVQCAQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	0	1
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	1.0	0.9630
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	2.0	0.9185
AT4G02040			unknown protein		Lus10019069 [exp]	2.6	0.9050
					Lus10032951 [exp]	2.8	0.8997
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	2.8	0.9133
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	3.0	0.9135
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	3.0	0.8956
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	3.2	0.9087
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	3.9	0.8748
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	4.9	0.9079

Compare expression of checked genes

Lus10004109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.