Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22050 249 / 1e-80 Protein kinase superfamily protein (.1.2) AT3G19300 112 / 6e-27 Protein kinase superfamily protein (.1) AT1G49730 103 / 4e-24 Protein kinase superfamily protein (.1.2.3.4) AT4G20450 90 / 2e-19 Leucine-rich repeat protein kinase family protein (.1) AT3G13065 87 / 2e-18 SRF4 STRUBBELIG-receptor family 4 (.1) AT5G02800 86 / 2e-18 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G02810 86 / 3e-18 Protein kinase superfamily protein (.1) AT5G18610 85 / 7e-18 Protein kinase superfamily protein (.1.2) AT3G07070 83 / 3e-17 Protein kinase superfamily protein (.1) AT1G71830 83 / 4e-17 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013365 [exp] 422 / 1e-148 AT5G22050 301 / 8e-102 Protein kinase superfamily protein (.1.2) Lus10014071 [exp] 123 / 1e-30 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 122 / 4e-30 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10030741 [exp] 91 / 3e-20 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10003836 [exp] 89 / 5e-19 AT3G02810 472 / 4e-162 Protein kinase superfamily protein (.1) Lus10016021 [exp] 87 / 7e-19 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10003533 [exp] 87 / 1e-18 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10025849 [exp] 87 / 2e-18 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10012814 [exp] 85 / 1e-17 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215000 [exp] 275 / 4e-91 AT5G22050 355 / 3e-123 Protein kinase superfamily protein (.1.2) Potri.009G015600 [exp] 273 / 3e-90 AT5G22050 319 / 4e-109 Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 121 / 4e-30 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 114 / 7e-28 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.008G144700 [exp] 90 / 2e-19 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.005G252000 [exp] 89 / 2e-19 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 88 / 3e-19 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 89 / 4e-19 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 88 / 6e-19 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 87 / 2e-18 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004110 pacid=23147818 polypeptide=Lus10004110 locus=Lus10004110.g ID=Lus10004110.BGIv1.0 annot-version=v1.0 ATGAGTAACTTGAATTTCACTTCGAGTCGGTTGGTAGTTTTGATTCTGATATCTGGGCTTTGTTTTGCTCTTATTTTGCGGTCGGATTTCGGCGTTGGTG GGGAGATTCTCGTACAAGGAGGTGAGAATGGTACGGATGGGTTCAGGAGGAGGATTTACAGGAACCCAGATGGGGTTTCTGCTTATAAGGCCAGGTTTCG AGATGGCGAGGAGGATGAAGATGTGCTTCTGGTTAAGGATTTTGGTCAACGGGATGGTAACAATGGTGAATTTTGTAAACAAGTTGAGGTGTTGGCGAGA TTGCATCACCGCCATTTACTTGCTCTTAGAGGATTCTGCTCTGGCCGCCGGAGGTTTGTGGTGTTTGATAACATAGAGAACGGAAGCTTGAAGGAGCATC TTGATGATCCTCTCAGGACTCCATTGAACTGGAAAACAAGGTTACAAGTAGCCATTGGTGTGACAGCTGCACTGGAGTATCTGCTGCTTTTCAGCAGCCC ACCAATGTACCAGATATCCATCAGTTCCAGCACTATAATGCTCGACCATAACTTCATCGCCAAGGTACCTCAGAAACCAGTCATCCACCACACCATATCG CTTGTTCATCCCATGTTTTGCAGTGACCATATCGTCCTTCTCCTTGCAGCTTTCCGATATCGTCTAGATCCCACTTTCGCAAATGGTGCTGACGAGAAAC TCCTAAGTTCAGGCTCAGAAGGTGCTACAGAGTCGCGGCCAGGAAACATCGTGTTTCAGCTAGGACTGCTGATGCTGGAGCTCGTGACAGGACAATCGGC CGAGAAAGGAAGCATCGATGTAGTTAAATGGATTCAAGAATGCCGCTCTAGCAACTCTTTCCACAGGATGATCAATCCCGATCTCGGCAACAGTTATGAC TCCCGAGAGCTTAGAAAGCTCTTAGCTGTAGCTAGATTCTGCATCAGGACCAGAGATGAACCCGGAACCTGTATACCCTTGATATTCAGATACCTCCAGA AGGAGGTTGATGTTAGGAATCTGAAGGTTCAACCAGTAGAGTTGACCAAACTACCAACCAAAACAATCCAGTACTGA
AA sequence Show only first row Show all	>Lus10004110 pacid=23147818 polypeptide=Lus10004110 locus=Lus10004110.g ID=Lus10004110.BGIv1.0 annot-version=v1.0 MSNLNFTSSRLVVLILISGLCFALILRSDFGVGGEILVQGGENGTDGFRRRIYRNPDGVSAYKARFRDGEEDEDVLLVKDFGQRDGNNGEFCKQVEVLAR LHHRHLLALRGFCSGRRRFVVFDNIENGSLKEHLDDPLRTPLNWKTRLQVAIGVTAALEYLLLFSSPPMYQISISSSTIMLDHNFIAKVPQKPVIHHTIS LVHPMFCSDHIVLLLAAFRYRLDPTFANGADEKLLSSGSEGATESRPGNIVFQLGLLMLELVTGQSAEKGSIDVVKWIQECRSSNSFHRMINPDLGNSYD SRELRKLLAVARFCIRTRDEPGTCIPLIFRYLQKEVDVRNLKVQPVELTKLPTKTIQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	0	1
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	2.8	0.9384
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	4.7	0.9165
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	4.9	0.9336
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	5.5	0.9427
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	6.2	0.9355
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	6.5	0.9275
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	7.9	0.9257
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	12.0	0.9206
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	13.2	0.9328
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	16.6	0.9135

Compare expression of checked genes

Lus10004110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.