Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37270 335 / 4e-117 ATRPS5B ribosomal protein 5B (.1.2) AT3G11940 335 / 4e-117 AML1, ATRPS5A ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) ATCG00900 42 / 0.0001 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 42 / 0.0001 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000946 [exp] 357 / 2e-125 AT2G37270 374 / 8e-134 ribosomal protein 5B (.1.2) Lus10013381 [exp] 348 / 8e-122 AT2G37270 370 / 1e-132 ribosomal protein 5B (.1.2) Lus10008436 [exp] 345 / 2e-118 AT3G11940 371 / 3e-130 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063200 [exp] 325 / 7e-113 AT2G37270 359 / 4e-128 ribosomal protein 5B (.1.2) Potri.006G197700 [exp] 323 / 4e-112 AT3G11940 358 / 2e-127 ARABIDOPSIS MINUTE-LIKE 1, ribosomal protein 5A (.1.2) Potri.013G138900 [exp] 41 / 0.0003 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10004113 pacid=23157522 polypeptide=Lus10004113 locus=Lus10004113.g ID=Lus10004113.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTGGCTCCTGCTCCAGTTCCCATTGCAGCTCCCGCTCCGGCTTCGGCTTCGGCTACGACGGAAGTCAAGCTCTTCAATCGCTGGTCATTTG ATGAAATCTCGATCGGCGACATTTCTTTGTCTGATTATATTGGAGTGCAAGCAGCCAAGCATGCTACCTTTGTGCCCCACACAGCTGGGAGGTACTCAGC CAAGCGATTCAGGAAGGCCCAATGCCCGATTGTCGAGAGACTGACCAACTCCCTCATGATGCACGGGAGGAACAATGGTAAGAAGCTGATGGCTGTGAGG ATCGTGAAGCACGCCATGGAGATCATCCATCTCCTTACTGATCTCAACCCGATCCAAGTCATCGTTGATGCTGTTATCAACAGTGGTCCTAGGGAAGATG CCACCAGAATCGGCTCAGCTGGTGTGGTGAGGCGTCAGGCTGTTGATATTTCCCCCCTGAGGCGGGTCAACTCGGCCTTGTATCTCTTGACCACCGGAGC ACGCGAGTCTGCTTTCCGTAACATCAAGACCATCGCCGAATGCTTGGCTGACGAACTCATCAATGCCGCTAAGGGTTCCTCCAACAGGTTTGTAGATATT AAACAGAGATCGCTTCTCTGCTATGTTAGCAGTAACAAGTGCGGCACGATTATTCCAGAAACAGTAATTGGAGATCGGTGTGAAGATATGAGCTCCAGCA TGAGCGACAGAATTTGCTTCATCCACGAATGTTGCAGCGAGTCATCAGATTCACGGTATCGTCACTGCTACTCAGTTCTATCCTGCACTCAGCTCCTTTG GAAATCAAGTGCCACAATGGCACAATCTTCTTACAACCCATTTCAACGTTCAAACATGATGCGGCAGATGGCCTTCTCTAAACCAAAAAGGATGGCTCAG GCCATTTGA
AA sequence Show only first row Show all	>Lus10004113 pacid=23157522 polypeptide=Lus10004113 locus=Lus10004113.g ID=Lus10004113.BGIv1.0 annot-version=v1.0 MAEVAPAPVPIAAPAPASASATTEVKLFNRWSFDEISIGDISLSDYIGVQAAKHATFVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR IVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNSALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNRFVDI KQRSLLCYVSSNKCGTIIPETVIGDRCEDMSSSMSDRICFIHECCSESSDSRYRHCYSVLSCTQLLWKSSATMAQSSYNPFQRSNMMRQMAFSKPKRMAQ AI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10004113 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	2.4	0.9192
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	3.5	0.9126
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	3.5	0.9224
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	4.0	0.9350
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	8.5	0.9186
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	10.0	0.9132
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	11.2	0.8958
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	11.5	0.9099
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	12.0	0.8986
AT3G51010			unknown protein		Lus10026320 [exp]	12.6	0.8392

Compare expression of checked genes

Lus10004113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.