Plant FIBer expression Database

Lus10004116 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27970 221 / 9e-67 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000943
[exp]
339 / 2e-108 AT5G27970 2064 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G035100
[exp]
281 / 6e-88 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.014G070600
[exp]
41 / 0.0004 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
PFAM info
Representative CDS sequence
>Lus10004116 pacid=23157517 polypeptide=Lus10004116 locus=Lus10004116.g ID=Lus10004116.BGIv1.0 annot-version=v1.0
ATGTGGTTTTCCATGGGGATTGACACTGTTGCTTGGGGTTCTATTCTGCAGCTCCGTACGTTGTCTAGCCCCAGTGAAATTGCACATAATGATGATATCC
TACGAATATTTTTAGCTGCATGTGAGGTGAAGACTGTCAAGCTTAGTGTAATTGGACTTTCCTGTCTGCAAAAGCTCATATCGCATGATGCAGTTGCACC
AGCAGCTTTGAAGGACATACTTTCAACTTTGAAAGATCATTCCGAGATGACTGATGAGAGTGTTCAACTAAGGACTCTACAGACTCTTTTGATTCTGTTT
CAGTCACGTTTACACCCAGAAAAGGAGGAAGATATGGCTCAAGCACTTTATGTATGTCTTCGGCTTCTTGAGAACAATCGCTCTGACAGTGTAAGAAACA
CTGCTGCCGCTACCTTCAGGCAGGCAGTTGCATTGGTGTTTGATCATGTGGTTGATGCCGAGTCTCTACCTGTGGCAAAGTTTGCTTCTGGAGTTCATCT
TTCTCGATCGAGTTCAGTTACTGTTGATGTTAACCGGCGTATGAATCATTCAGAGTATGTCATCCCTTGA
AA sequence
>Lus10004116 pacid=23157517 polypeptide=Lus10004116 locus=Lus10004116.g ID=Lus10004116.BGIv1.0 annot-version=v1.0
MWFSMGIDTVAWGSILQLRTLSSPSEIAHNDDILRIFLAACEVKTVKLSVIGLSCLQKLISHDAVAPAALKDILSTLKDHSEMTDESVQLRTLQTLLILF
QSRLHPEKEEDMAQALYVCLRLLENNRSDSVRNTAAATFRQAVALVFDHVVDAESLPVAKFASGVHLSRSSSVTVDVNRRMNHSEYVIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G27970 ARM repeat superfamily protein... Lus10004116
[exp]
0 1
AT5G10470 KAC1, KCA1 KINESIN CDKA;1 ASSOCIATED 1, k... Lus10035941
[exp]
1.0 0.9812
AT5G27970 ARM repeat superfamily protein... Lus10004117
[exp]
2.4 0.9744
AT1G58250 SAB SABRE, Golgi-body localisation... Lus10024283
[exp]
3.7 0.9751
AT3G12590 unknown protein Lus10001699
[exp]
4.6 0.9647
AT3G63460 EMB2221 transducin family protein / WD... Lus10016374
[exp]
5.0 0.9675
AT3G12590 unknown protein Lus10005160
[exp]
6.0 0.9542
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Lus10040892
[exp]
7.7 0.9678
AT5G42220 Ubiquitin-like superfamily pro... Lus10034563
[exp]
8.0 0.9546
AT4G39420 unknown protein Lus10006814
[exp]
10.1 0.9662
AT2G35630 GEM1, MOR1 MICROTUBULE ORGANIZATION 1, AR... Lus10001216
[exp]
12.2 0.9604

Lus10004116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.