Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04940 349 / 7e-121 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 340 / 4e-117 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 326 / 1e-111 DES1 L-cysteine desulfhydrase 1 (.1.2) AT2G43750 322 / 3e-109 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 319 / 6e-109 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G59760 313 / 6e-105 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G22460 301 / 5e-102 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G61440 286 / 2e-95 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 259 / 2e-84 CS26 cysteine synthase 26 (.1) AT1G55880 99 / 3e-23 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019002 [exp] 357 / 6e-124 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 326 / 2e-111 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 324 / 1e-110 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 315 / 2e-106 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 313 / 2e-105 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 283 / 6e-94 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 270 / 1e-88 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 249 / 4e-80 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 213 / 4e-67 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048200 [exp] 370 / 7e-129 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.005G048132 [exp] 367 / 1e-127 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 365 / 6e-127 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.013G035200 [exp] 350 / 4e-121 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 335 / 4e-115 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 332 / 5e-114 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 329 / 9e-113 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 326 / 9e-112 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 320 / 3e-108 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.002G160800 [exp] 297 / 1e-99 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10004118 pacid=23157520 polypeptide=Lus10004118 locus=Lus10004118.g ID=Lus10004118.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGCAAGTCTGCTATCAAGAAAGACATTACTGAATTGATAGGTAACACCCCTATGGTTTATCTCAACAACATAACCGAAGGCTGCGTAGCCC GAGTAGCTGCCAAGCTCGAATCCCTCGAGCCAGCATTCAGCATCAAAGACCGAATTGCGCATAGCATGATCAGAGATGCAGAAGAGAAAGGCTTGATCAC ACCGGGAAAGTCTGTTCTGGTCGAGGTAACGAGTGGAAACACGGGCATCGCATTAGCAGCAGTAGCTGCAGCGAAGGGCTATAAAGTAATTTCAGTGATG CCATCTTTCAAGAGGCTCCAAGGCCTTCTGGATAAGGCTAATGAGTTGGTAAAGGAGACGCCTAATGGCTACATGCTCAATCAGTATGTCAATGAAGCCA ATCCACAGGTTCATTATGAAACAACCGGACCAGAGATATGGAGAGACTCAGTTGAACAAGTTGACTTTCTGATTGCTGGTATAGGCACCGGAGGAACAAT CACAGGTGCTGGACGATTCCTTAAAGAACAGAATCCAGCCATCAAGGTTATCGGCGTAGAACCAGCTGAAAGTGCTTTCTTCAATGGAGGCAAGCGTGGT ATGCATCATATCGAAGGACTCGGTGCTGGAATTGCTCCTGATGTTCTTGATGTACAACTGCTTGAAAAAGTCATTCCAGTGTCAAGTGAGGTTGCAATTG AAACTGCCAAGTTGATTGCCATCAAGGAAGGCTTGCTGGTTGGGATTTCTTCAGGTGCAGTTACTGCTGCTGCTTTGAAGCTGGCTAAGCTGCCAGAAAA TGCAGGGAAACTCATCGTGGTCATCTTCGCGAGTGCAGGTGAACGTTACTTGTCGACTAAGCTATTCGATTCCGTGAGGCACAAGGCAGAGAATTTGACC ATCCATTGA
AA sequence Show only first row Show all	>Lus10004118 pacid=23157520 polypeptide=Lus10004118 locus=Lus10004118.g ID=Lus10004118.BGIv1.0 annot-version=v1.0 MEGGKSAIKKDITELIGNTPMVYLNNITEGCVARVAAKLESLEPAFSIKDRIAHSMIRDAEEKGLITPGKSVLVEVTSGNTGIALAAVAAAKGYKVISVM PSFKRLQGLLDKANELVKETPNGYMLNQYVNEANPQVHYETTGPEIWRDSVEQVDFLIAGIGTGGTITGAGRFLKEQNPAIKVIGVEPAESAFFNGGKRG MHHIEGLGAGIAPDVLDVQLLEKVIPVSSEVAIETAKLIAIKEGLLVGISSGAVTAAALKLAKLPENAGKLIVVIFASAGERYLSTKLFDSVRHKAENLT IH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	1.4	0.8878
AT5G67390			unknown protein		Lus10011080 [exp]	2.4	0.8702
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	6.0	0.8893
					Lus10031452 [exp]	9.5	0.8631
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	14.7	0.8400
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	17.5	0.8551
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	19.7	0.8745
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	20.5	0.8596
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	22.8	0.8641
AT3G12300			unknown protein		Lus10005383 [exp]	23.5	0.8814

Compare expression of checked genes

Lus10004118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.