Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 1084 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT1G75660 786 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 706 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000941 [exp] 1277 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 1013 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 721 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 590 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 558 / 0 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 511 / 8e-168 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 478 / 5e-155 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 428 / 7e-139 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 402 / 2e-131 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 1126 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 1075 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 793 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.013G070200 [exp] 743 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.002G024100 [exp] 724 / 0 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10004119 pacid=23157507 polypeptide=Lus10004119 locus=Lus10004119.g ID=Lus10004119.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCCGCGTTCTACAGATGGCTGGCGGACCGGTACCTACTCGCAATTGTCGACGTCGTGGAGGAGGAGCCTCAGATGGACGCCAAAATCGGCG TCGTCAGGCCAGTCGACGTCTCCGGACCTAACCCCAACGGTATGGAGTTCGATAATTTGTATCTCGACATGAACGGGATCATCCACCCTTGCTTCCACCC CGACGGCAAGCCAGGACCTGCTACTTACGACGATGTGTTGAGGTCGATATTCGATTACATTGATCATATTGTGTCATTGGTTCGGCCGAGGAGGCTTCTC TACATGGCAATAGATGGGGTTGCGCCAAGAGCTAAGATGAACCAGCAGCGATCAAGGCGGTTTAGAGCTGCAAAAGATGCGGCAGAAGCGGAAGCCGAAG AAGAAAGATTGAGGAAAGAATTTGAGGCGGAAGGGAAACTATTGCCTCCTAAAGAGAAACGCGAAACGTCGGATTCGAATGTTATTACTCCCGGTACTCC GTTCATGGCGGTACTATCGGTTGCTCTTCAGTACTATATACAGTTTAGGTTGAACCATAACCCTGGGTGGCGGTATTTAAAGGTTCTTCTTTCTGATGCA AATGTTCCTGGCGAAGGAGAGCACAAAATCATGTCGTACATTAGATTGCAACGCAACCTTCCTGGTTTTAATCCTAATACAAGGCATTGTCTTTATGGAT TGGATGCTGATTTGATTATGCTAGCATTAGCAACACATGAGATTCATTTTTCAATACTGAGAGAGATGGTAAGCTTTCCTGGACAGCAGGAGAAGTGTTT TCAATGTGGTCAAGCCGGTCATCTTGCTGCTGAATGTCGCAGCAAGGCTGGAGGTGACCCTTTAGAGTGGGACGTCGAAAATGATGTTCCAATTTATAAG AAAAAGTATCAGTTCCTCAACATATGGGTGTTACGGGAATATTTGGAATATGATTTGAGTATTCCAAATCCTCCTTTTACAATCGACTTTGAGCGCATTG TGGATGATTTTGTATTCCTATGTTTCTTTGTTGGCAATGATTTCCTTCCGCACATGCCGACTTTGGAAATTAGAGAGGGTGCTATTACATTGCTTATGCA TGTTTACCGGAAGGAATTCTCTGAGATGGGTGGCTATCTTACTGATGCGGGTGAGGTTCATCTTGATCGAGTTCAGCATTTTATTCAGTCTGTATCTATT CATGAAGAGCAGATCTTCCAGAAGAGGACTCGGATACAGCAGTCTATAGAGAATAATGAGAGGTTCAAAGCAAGAAGAGACGGCCTAGAGCCACCTCCAC CGCCAGCTTCAGACACGGTTTGCCAGTCTATAGAGAATAATGAGAGGTTCAAAGCAAGAAGAGACGGCCTAGAGCCACCTCCACCGCCAGCTTCAGACAA GGTAAAACTTGGCGAGTCTGGATACAAAGAACGATATTATGCTGAAAAATTCAATGCATCAACTCCAGAGGAGTTGAACAAAGTGCGCGAAGATGTAGTT TTGAAATATGTAGAAGGCCTATGTTGGGTGTGTCGCTACTACTACCAAGGCGTCTGTTCGTGGCAATGGTTTTACCCGTACCATTATGCTCCATTTGCCT CAGACCTTGTGGATCTTACCGATTTGGAGATTACATTTTTTCCGGGGGAGCCATTCAAACCCTTCGATCAACTCATGGGAACCCTACCAGCTGCAAGTTC GAATTCATTGCCAAAAGAATACAGAAAACTGATGACAGACTCTTTGTCACCGTTACAAACGTTCTTCCCTTCCGACTTTGAGATTGATATGAACGGCAAA CGCTTTGCCTGGCAGGGTGTTGCAAAATTACCGTTCATCGACGAGAGGAAATTGTTAACACAGACAAAGAAGCTCGAGAGCACATTAACGGAGGAAGAGC GGGCTCGCAACAGTCGGATGCTTGATTTGCTTTATGTACATCCTATGCATCCATTGGGTCAGCAAATCGTCGCCTATTACCATCATAACTATCACATACC TCCCCACGGACGGTCTTTCTGGGCAGTTGATCCATATGCTAGCGGTGGGACAAACGGGTTTATCGGGTTAAGCGAGAGGAATGTGCACAGAACCTTGGTC CCGTCCCCTGTAAATGGATTACCGCATATAGAGTACAACCAAGTCTTGAACATCACATATGTTTGTCCCCAAAACCATAGACACGTCTCGGAACCTCCGG TTGGTGTTAAATTTCCAGGGAAGATCGTAAAGGCCACGGATATCAAACCGCTCCCCATACTATGGCATGACGACAATACTGGACGGCGCCAGCAAGGCAG CGAAAGGCAACAAATCTCCGACAGCTCCTCGATCTTCGATTACGTTGTTAAGACTGTCTGTAATTGCGAAGGCACTTGTTAA
AA sequence Show only first row Show all	>Lus10004119 pacid=23157507 polypeptide=Lus10004119 locus=Lus10004119.g ID=Lus10004119.BGIv1.0 annot-version=v1.0 MGVPAFYRWLADRYLLAIVDVVEEEPQMDAKIGVVRPVDVSGPNPNGMEFDNLYLDMNGIIHPCFHPDGKPGPATYDDVLRSIFDYIDHIVSLVRPRRLL YMAIDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKEFEAEGKLLPPKEKRETSDSNVITPGTPFMAVLSVALQYYIQFRLNHNPGWRYLKVLLSDA NVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLALATHEIHFSILREMVSFPGQQEKCFQCGQAGHLAAECRSKAGGDPLEWDVENDVPIYK KKYQFLNIWVLREYLEYDLSIPNPPFTIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAITLLMHVYRKEFSEMGGYLTDAGEVHLDRVQHFIQSVSI HEEQIFQKRTRIQQSIENNERFKARRDGLEPPPPPASDTVCQSIENNERFKARRDGLEPPPPPASDKVKLGESGYKERYYAEKFNASTPEELNKVREDVV LKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLVDLTDLEITFFPGEPFKPFDQLMGTLPAASSNSLPKEYRKLMTDSLSPLQTFFPSDFEIDMNGK RFAWQGVAKLPFIDERKLLTQTKKLESTLTEEERARNSRMLDLLYVHPMHPLGQQIVAYYHHNYHIPPHGRSFWAVDPYASGGTNGFIGLSERNVHRTLV PSPVNGLPHIEYNQVLNITYVCPQNHRHVSEPPVGVKFPGKIVKATDIKPLPILWHDDNTGRRQQGSERQQISDSSSIFDYVVKTVCNCEGTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	0	1
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	1.0	0.9047
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	2.0	0.8908
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	3.7	0.8603
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	5.7	0.8384
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	6.4	0.8034
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	7.2	0.8654
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	9.2	0.8519
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	9.3	0.8802
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	12.8	0.8642
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	13.3	0.8574

Compare expression of checked genes

Lus10004119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.