Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 65 / 1e-12 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000941 [exp] 126 / 7e-34 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 91 / 2e-21 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10019004 [exp] 86 / 1e-19 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 95 / 4e-23 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 78 / 5e-17 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004120 pacid=23157516 polypeptide=Lus10004120 locus=Lus10004120.g ID=Lus10004120.BGIv1.0 annot-version=v1.0 ATGGCCGGTCCCCAGCTGGGCGAAGCAGCTCACCGTCTCGTTAAAAACAGCCTGAATATAAGATCGAACAACGGGTTCCTCCAACAGCCTCTACTCCCCA ACGGTTCCGGCAATCAGTTCAACCACCGAGGCAGAACGCCTGCACATCACAGCTACGGAAGAGGCACTGACCAGGAACCAAACTACCGCCACGGACAGCA CAACAACCACCACCACCAACCGGGGCCTAGATATCCTTTCCCATCGAATGGCGGATCTCGACACAACTTCAGCGGCCATGACAAGTCCCGTGAGTTGGCT ATGGGCATGTCTGGTTTGACTCTGGATGAAAATGGTCCGCCAGTAAGGCCGCCTGCAGTGCAGCTGTTACAGAGGAGACCAAATCCGGGCTATCCCCAGA ACCGGGTCGACAATACCACAACCGGTCCACTTCCTTCACCTCCCACCAAATGGTTCAATAATCCGGCCGATGGACAGGCAGATTCATACTTTCAGCGAAA CGGCCACTAG
AA sequence Show only first row Show all	>Lus10004120 pacid=23157516 polypeptide=Lus10004120 locus=Lus10004120.g ID=Lus10004120.BGIv1.0 annot-version=v1.0 MAGPQLGEAAHRLVKNSLNIRSNNGFLQQPLLPNGSGNQFNHRGRTPAHHSYGRGTDQEPNYRHGQHNNHHHQPGPRYPFPSNGGSRHNFSGHDKSRELA MGMSGLTLDENGPPVRPPAVQLLQRRPNPGYPQNRVDNTTTGPLPSPPTKWFNNPADGQADSYFQRNGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	0	1
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	6.7	0.9579
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	9.4	0.9459
AT5G59350			unknown protein		Lus10004955 [exp]	16.5	0.9452
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	21.6	0.9137
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	22.4	0.9445
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	23.0	0.9376
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	25.7	0.9365
					Lus10002555 [exp]	26.6	0.9413
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	27.4	0.9292
AT2G30530			unknown protein		Lus10019115 [exp]	28.2	0.8923

Compare expression of checked genes

Lus10004120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.