Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28040 87 / 2e-20 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 80 / 8e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000940 [exp] 215 / 6e-69 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 125 / 8e-35 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 121 / 5e-33 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261700 [exp] 115 / 5e-31 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 112 / 7e-30 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004121 pacid=23157531 polypeptide=Lus10004121 locus=Lus10004121.g ID=Lus10004121.BGIv1.0 annot-version=v1.0 ATGGAGATTAAAGTTGAGGATCAGAAGTCAACTCCCAGGTCAAGGAAGCGACCGAGACCCCGCTCCTTGGCTACTCCTCTCTCTCTCAACAGCTACGGTG GCAGCCATGGCAGTGGTGGTGCAGCAGGAGGAGGAAATGTTGGTGTTAAAATGGAAGATAAGCGTTTCCATAATGATGTTCTTGGTTCGAATAATGAGCA AACTCATAGCAACATGAATGTTCCTGGTCTGATTGAGGAGACTGTGAAGAGTTGCTTATCTCCATTGTTCAAGGAGTTGTTGAATAATAATACTACAGCA TCTGGTTCCGGGATTGGCGGTAGAGGGATTGGGGGTTTGGCGATGAACTCAATGCCATTGAGTTTCGGTGGAATCGATATGATGGCTGATGAGAAATGGA GGAAGCAGCAGATACTGGAGTTGGAGGTGTACTCGAAACGACTGGAGTTGGTTCAAGACCAGGTCAGATCGCAGCTCGAGGAGTTACGCTCTCTGGGTCG GTAG
AA sequence Show only first row Show all	>Lus10004121 pacid=23157531 polypeptide=Lus10004121 locus=Lus10004121.g ID=Lus10004121.BGIv1.0 annot-version=v1.0 MEIKVEDQKSTPRSRKRPRPRSLATPLSLNSYGGSHGSGGAAGGGNVGVKMEDKRFHNDVLGSNNEQTHSNMNVPGLIEETVKSCLSPLFKELLNNNTTA SGSGIGGRGIGGLAMNSMPLSFGGIDMMADEKWRKQQILELEVYSKRLELVQDQVRSQLEELRSLGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	0	1
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	1.4	0.8876
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	2.0	0.8771
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	3.0	0.8735
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	4.0	0.8292
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	4.9	0.8640
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	5.0	0.8396
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	6.6	0.8242
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	7.2	0.8125
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	8.5	0.8381
					Lus10014600 [exp]	11.0	0.8227

Compare expression of checked genes

Lus10004121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.