Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32640 1048 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT3G44340 1041 / 0 CEF clone eighty-four (.1.2) AT3G07100 338 / 9e-100 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT2G27460 74 / 5e-13 sec23/sec24 transport family protein (.1) AT1G05520 51 / 5e-06 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000939 [exp] 1456 / 0 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10016597 [exp] 337 / 2e-99 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 83 / 8e-16 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10020622 [exp] 82 / 2e-15 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10013100 [exp] 45 / 4e-05 AT3G07100 220 / 5e-67 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035800 [exp] 1193 / 0 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 1191 / 0 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.010G211100 [exp] 389 / 3e-118 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 385 / 7e-117 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.009G163300 [exp] 74 / 3e-13 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.004G201800 [exp] 72 / 1e-12 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.002G082900 [exp] 49 / 1e-05 AT4G32640 51 / 6e-07 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 49 / 3e-05 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0092 [flax] [poplar] PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10004122 pacid=23157509 polypeptide=Lus10004122 locus=Lus10004122.g ID=Lus10004122.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCTGTGCCTCCTGGGGCACCTAGGCAACAGCCACCAACGGGACCGCCGAATTACCAGCAGAATCCGAATGCTCTAGCCGAAAATTTCCAGA ACATGAACCTTAATCGTCCCAGGGGGCCGCCATTCGGTCAGCCGCCTCCATTTACATCTGCCGGTTCTGCATCACCGATGAACCGTCCTGGTCCATTTCC ACCCGGTGGTGCGAGTCCCAGGCCTGCTTCGGGGCCTCCATCGTCTACAATGCCGCTGCCGAATATGGCTCCTGGAAGACCTAGTGGACCGCCTTTCGGC CAGGCTCCTCCGTTTGGTGCCAGACCGCCTCCTCCTGGGGCGTTTCCAACTTCGATGGCTCCGTCTGCTGGGTCTCCTCCTTATGGAGGAGCACCTCCAC CTGGTGCTCGTCCATCTCCAGTTGGCTCCTCGTCGCCTATGGCCATGGGACCTCCTGGTGCTTCGGGTGGTTTTATGAGTAATGGGCCACCTGCTCCGGG ATTTCGAGGTGGTCAACAGTTTCCTGGGCCGGCTGGTGGTCAGCAACAACCCTCTATGGGTCCTCCTCCGGCCATGGTGCCACCAGGGCGTGGTCCTCCT CAAGCAGGTATGCGACCGTTCATGGGAAGTTCGGGACCTGGTTCTTTGCAGGGACCTCCCCCTTCAGCAATGGCTCAAGGGCCACCCAGTTTTGGCGGAC CTCCTCAAGGAATGTCGACTCCTGTTGCTTCTCCGTTTGCACCACAGATGCAATCACAACCAGTCAGGAATGTTACTGTCCCGAGTAATGGGATGCCTAC GATGCCGGGGTCTATGCCACCACCTAGAATGTACGGAATGCCACCACCGATGCAAACACAAATACCACCGATGCAAAATCAAATGACTGCTATATCACCT GTTATGGGTCAAACTGGAGGTGCACAGACAGGGGCGTCAAAGATTGATCCCAATCAAATTCCAAGGCCCATCCCTAGTTCCTCTGTCATCTTGCATGATA CTCGACAGGGAAATCAGGCCAACCCACCTCCGCCTGTAACAAGTGACTACATTGTTCGGGATACTGGAAATTGCAGTCCACGCTACATGAGGTGCACCAT CAATCAGATTCCATGCACTGCTGATCTTTTGACGACTTCTGGCATGCAATTAGCCTTGTTGGTCCAACCTTTAGCTCTTCCTCGTCAATCTGAGGAGCCT ATCCAGATTGTGGATTTTGGAGAAAGTGGCCCGGTTCGCTGTTCTCGTTGTAAAGGCTATATAAACCCTTTCATGAAGTTCATTGATCAGGGAAGACGTT TCATCTGTAATTTGTGTGGTTTTTCTGATGAAACACCCAACGACTACCATTGCAATTTAGGTCCTGATGGTAGACGTAGAGATGCCGATGAAAGACCTGA ATTGTGCAGGGGGACAGTTGAATTTATTGCAACAAAGGAGTACATGGTGCGTGAACCAATGCCAGCTGTTTATTTCTTCCTTATTGATGTGTCGATGAAT GCCATTCAAACAGGTGCAACTGCAGCAGCCTGTAGTTCCATTAACAAAGTCATCTCTGATCTTCCGGAAGGGCCTAGGACAATGGTAGGAATTGCAACGT TTGATTCAACAATCCACTTCTACAATTTGAAACGGGCACTACAGCAGCCGTTAATGCTGATCGTTCCCGACATACAAGATGTTTATACTCCTCTGCAAAC TGATGTCATTGTGCCAGCTTCTGAGTGCCGTCAACATTTGGAACTCTTGCTGGAAAGTATTCCAACAATGTTTCAGAATACTAGAACAGCAGAGTCGGCT TTTGGTGCAGCAATCAAGCGATTCCTTTCTAAAACTCTGTTGCTTCTCATCCAGGCAGCCTTCTTAGCAATGAAAATTCTTCCCTCCATTGGCCTAGGAG CACTTTCCGCAAGAGAGGCTGAGGGACGAAGCAATATCTCTACTGGGGACAAGGAGACCCATAAGTTACTCCAGCCTGCTGACAAAGTTCTGAAGGACAT GGCAGTTGAATTTGCAGAATATCAGGTTTGTGTTGATCTATTCATCACAACCAAGACGTATGTGGACATTGCTTCTATCTCTGTCATCCCAAAAGTTACT GGAGGACAGGTCTATTATTATCATCCATTTTCAGTAGTCTCGGATTCCGTGAAGCTGTGTAATGACCTGAGATGGAATGTCACAAGGCCTCAAGGATTCG AGGCAGTCATGCGAGTCCGGTGCAGTCAGGGAATTCAAGTACAAGATTACCATGGAAACTTCTGCAAGCGCATTCCGACTGATGTTGACCTTCCTGGGAT TGATTGTGATAAAACTATAATGGTGACTTTAAAGCACGACGACAAGCTACAAGACGGTGCAGAATGTGCTTTCCAGTCTCAGTCCTGCGCATTGAGATCT GTTATGAAATCGTTTTCGTCTATCCCGTCTAATGCTGAAGCTGTCTTTGCAGCGGCACGTGATATTCCTATCACCCCACCCTTGCTTGTCCGCGATCAAG TGACACACTTCTGCACAAACATTCTTCTTGCGTACCGGAAGTTCTGTGCAACGGTGTCATCTTCGGGACAGCTTATCCTTCCAGAAGCACTCAAACTGTT GCCTCTATACACCCTTGCTTTAATCAAGAGTGCTGGACTAAGAATCGAAGGGAAGATAGACGAGCGTTCTTTCTGGATCAGTTACGTCTCCTCAGTCTCT ACTCCTTCAGCAATCCCACTCGTTTATCCAAGGATGATCGCTGTTCATGACCTGGATACCCAGGACTCGAACGGATCTGTTCTTCCTTCTCCGCTTCCGC TTTCTAGTGAACATGTCAGTGACGATGGAATTTATCTGCTGGAGAACGGTCAGGATTGTTTGATCTACATTGGGAACTCGGTCAAACCTGACGTTCTGCA GCAATTGCTCGGCATTTCGTCCCCCGATGAAGCAACCCCTCAGGTGTGTGCTGAGTTCGTCCTGCAGCAGTACGATAATCCACTGTCGAAGAAGTTAAAC GAAGTGGTAAACGAGATCCGCGGACAGCGATGTTCCTTCCTCCGGTTAAGGCTGTGCAAGAAGGGAGATTCATCAGGAATGGCATTCTTTTCGTACCTGA TCGAGGACAAGGTCCCCACCGGCGGTCTCTCTTACGTGGAGTTCCTTGTCCACATCCATCGACAAATCCAGATGAAGATGAATGCTTAG
AA sequence Show only first row Show all	>Lus10004122 pacid=23157509 polypeptide=Lus10004122 locus=Lus10004122.g ID=Lus10004122.BGIv1.0 annot-version=v1.0 MAAPVPPGAPRQQPPTGPPNYQQNPNALAENFQNMNLNRPRGPPFGQPPPFTSAGSASPMNRPGPFPPGGASPRPASGPPSSTMPLPNMAPGRPSGPPFG QAPPFGARPPPPGAFPTSMAPSAGSPPYGGAPPPGARPSPVGSSSPMAMGPPGASGGFMSNGPPAPGFRGGQQFPGPAGGQQQPSMGPPPAMVPPGRGPP QAGMRPFMGSSGPGSLQGPPPSAMAQGPPSFGGPPQGMSTPVASPFAPQMQSQPVRNVTVPSNGMPTMPGSMPPPRMYGMPPPMQTQIPPMQNQMTAISP VMGQTGGAQTGASKIDPNQIPRPIPSSSVILHDTRQGNQANPPPPVTSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALPRQSEEP IQIVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFSDETPNDYHCNLGPDGRRRDADERPELCRGTVEFIATKEYMVREPMPAVYFFLIDVSMN AIQTGATAAACSSINKVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDIQDVYTPLQTDVIVPASECRQHLELLLESIPTMFQNTRTAESA FGAAIKRFLSKTLLLLIQAAFLAMKILPSIGLGALSAREAEGRSNISTGDKETHKLLQPADKVLKDMAVEFAEYQVCVDLFITTKTYVDIASISVIPKVT GGQVYYYHPFSVVSDSVKLCNDLRWNVTRPQGFEAVMRVRCSQGIQVQDYHGNFCKRIPTDVDLPGIDCDKTIMVTLKHDDKLQDGAECAFQSQSCALRS VMKSFSSIPSNAEAVFAAARDIPITPPLLVRDQVTHFCTNILLAYRKFCATVSSSGQLILPEALKLLPLYTLALIKSAGLRIEGKIDERSFWISYVSSVS TPSAIPLVYPRMIAVHDLDTQDSNGSVLPSPLPLSSEHVSDDGIYLLENGQDCLIYIGNSVKPDVLQQLLGISSPDEATPQVCAEFVLQQYDNPLSKKLN EVVNEIRGQRCSFLRLRLCKKGDSSGMAFFSYLIEDKVPTGGLSYVEFLVHIHRQIQMKMNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	0	1
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	2.2	0.9405
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	3.2	0.9374
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	3.5	0.9257
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	4.0	0.9316
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	4.1	0.9082
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	4.6	0.9323
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	7.3	0.9043
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	7.4	0.9292
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	8.4	0.9139
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	8.7	0.9120

Compare expression of checked genes

Lus10004122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.