Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28060 205 / 3e-69 Ribosomal protein S24e family protein (.1) AT3G04920 185 / 2e-61 Ribosomal protein S24e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000938 [exp] 254 / 1e-88 AT5G28060 219 / 5e-75 Ribosomal protein S24e family protein (.1) Lus10015941 [exp] 133 / 2e-41 AT5G28060 132 / 1e-41 Ribosomal protein S24e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087800 [exp] 207 / 3e-70 AT5G28060 223 / 9e-77 Ribosomal protein S24e family protein (.1) Potri.008G152500 [exp] 207 / 3e-70 AT5G28060 221 / 1e-75 Ribosomal protein S24e family protein (.1) Potri.005G049400 [exp] 207 / 4e-70 AT5G28060 222 / 3e-76 Ribosomal protein S24e family protein (.1) Potri.013G036100 [exp] 205 / 2e-69 AT5G28060 225 / 1e-77 Ribosomal protein S24e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01282 [flax] [poplar] Ribosomal_S24e Ribosomal protein S24e
Representative CDS sequence Show only first row Show all	>Lus10004123 pacid=23157521 polypeptide=Lus10004123 locus=Lus10004123.g ID=Lus10004123.BGIv1.0 annot-version=v1.0 ATGGTGTCGGAGAAGCTCGGTTCTGGGATCACCATCCGCACCCGCAAGTTCATGACCAACCGTCTCCTCTCCAGGAAGCAGTTCGTTATTGAGGTTCTCC ATCCAGGAAAGGCCAATGTTCCCAAGGCTGAAATCAAGGCTATGTTGGCGACATTGTACTCTGTCAGGGATGAAAATGCTATCTTTGTGTTCAAGTTCAG GACCCACTTTGGAGGGGGAAAGTCTACTGGCTTTGGGCTGATTTATGATTCAGTTGAGAATGCCAAGAAGTTTGAGCCTAAGTACAGACTGATCAGGAAT GGACTTGATACCAAGGTTGAGAAGTCAAGGAAGCAGATGAAGGAACGCAAGAACAGGTCAAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCTGGAGATG CTGCCAAGGGTGGAAAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10004123 pacid=23157521 polypeptide=Lus10004123 locus=Lus10004123.g ID=Lus10004123.BGIv1.0 annot-version=v1.0 MVSEKLGSGITIRTRKFMTNRLLSRKQFVIEVLHPGKANVPKAEIKAMLATLYSVRDENAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRN GLDTKVEKSRKQMKERKNRSKKIRGVKKTKAGDAAKGGKKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	0	1
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	1.0	0.9162
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	3.2	0.9046
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	3.2	0.8815
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	3.5	0.8911
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	4.0	0.8862
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	4.9	0.8796
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	5.9	0.8760
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	6.9	0.8754
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	7.1	0.8705
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	8.1	0.8487

Compare expression of checked genes

Lus10004123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.