Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08720 941 / 0 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 460 / 1e-148 Protein kinase superfamily protein (.1) AT1G73660 447 / 3e-142 protein tyrosine kinase family protein (.1) AT1G18160 445 / 8e-142 Protein kinase superfamily protein (.1) AT5G03730 376 / 3e-117 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 360 / 2e-115 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 360 / 1e-111 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 354 / 2e-109 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 351 / 6e-109 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G23050 343 / 7e-106 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000937 [exp] 1648 / 0 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 465 / 4e-151 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 464 / 2e-149 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10038955 [exp] 445 / 9e-142 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10009062 [exp] 436 / 3e-138 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10014368 [exp] 374 / 9e-116 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 373 / 9e-116 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 367 / 1e-114 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 363 / 1e-112 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034800 [exp] 1134 / 0 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 1120 / 0 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 464 / 3e-149 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 462 / 1e-148 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 458 / 4e-146 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 452 / 5e-144 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 377 / 1e-117 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.016G095750 [exp] 375 / 9e-117 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G105100 [exp] 366 / 4e-114 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 365 / 2e-113 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004124 pacid=23157539 polypeptide=Lus10004124 locus=Lus10004124.g ID=Lus10004124.BGIv1.0 annot-version=v1.0 ATGACGTCGACCTTGCAATCGCCGCCTGTAAATGGGGGCAGAAATTCCGGCGGGGCGGACTACTTCGCGTCCGAGGAGGAGTTCCAGATGCAGCTGGCAC TGGCGATCAGTGCATCGTCTAATTCGCAGAGCGGGAGGGATGATCGGGAGAAGGATCAGATCCGAGCAGCGACGCTGCTGAGCTTAGGAGGGAATCGGCA TCATTCCATGGATGTGACGGGGCACAAGGGAGAAGCGGCTGCTGAGTCCTTGTCGAGACAGTTTTGGGAATACAGCGTTCTGGATTACGAGGAGAAGGTT GTAGATGGGTTTTATGATGTGTTCTCCTCGAGTTCAGAAAATCAAAGGAAAATGCCTTCCCTAGGGGACCTGGAGACAAATTCCGGCTCTTCTGGCATTG AAGCAGTGGTAGTGAATCGAACAATTGATCATAACTTGGAAGAGTTGGGGCAGGTTGCACAGTGTATTGCATTAGATTGCCCTGCAACTGACATTGGTAC TTTGGTCCATCAACTGGCTGAACTTGTAACAGGGCATATGGGTGGCCCTGTAAAGGACGCAAACATAATGTTGGCCAAGTGGATGGAGAAAAGCACAGAG TTGAGGACCGTCCTTCACACGAGTGTATTGCCCATTGGTTCGATAAATATTGGTTTGTCTCGTCACCGTGCATTGCTTTTCAAGGTATTGGCTGACACTA TAAGTCTACCTTGTCGATTGGTAAAAGGCAGTCATTATACTGGAGTTGAGGACGATGCTGTGAACATTATCAAATTGGAGGATGGAAGGGAATTTTTGGT CGACCTTATGGCAGCTCCAGGGACACTGATTCCTGCTGACATTCTAAATACCAGTAAAGTTCCTGCTCCTCATTCCTTTGATTCTGGACTTACAAGACCA AACTCATTGCCCGGTGAAGGCCCAAGCAATGCTGCCGGTGTTAGTTCTTCTGGACTATCCATGAAAGTAACTCATTCCAGTCGAGTAGATAATCCATCCT CAGCTACAGGAAGTTCTTTGTACGAGGAAAACCGTGGTGCTCATGCTGTTGGTGGTGGTGCTCGGATGAATGTAAATATAGTTCCTTACAATCAGAATGG CTCAGAAGATACGACGAACCTTTTTGCAGATCTCAACCCACTTCAGAACAAGGGAAATTTTTTTGTACATAATAAACCTGGGGATAATAAGTTTGAAGGC CAGAGAAATCCTGTGGTTCCAAATCGAGCCCCTGCTCCATTGATGTGGAAGACCCGATATGCAAACAATGAGGTACCTGGGAGAAAGGAGTATGATTATA TGGATGGCCTTTTCCCAAGAATTAACCGGGAACTAAGTAACTACAATCAGACATCCGCAGCTTCCTCTAGCTCCAATGTTCCCCGGAAGGCTCATCCTCA AAGTTCCACGACATTTTTTAATTCCAATCAAGCCGGCAGAGATAGTGAGCCTGGAAATTCCTGTATTGGTTCCAGTTCAGCAGTGGCATCTGGTGGTAGT CAGTATCAAAATCTGCCCTTCGGTGAGGCATTAACTTCGGCTTTTAATTCTGAGAATCGCTTGGATTCTACAAATTGGCAAAACAGTGGTATAACCAGGG AGGAAAATGGTGAAACTAGCTTACCTGATCCAAGGAAGCTGACAGATGACAGGTTTATAGGCAACAATTTGAAATTAAAGGATTTGGAAAGTCCTAGTTC ATCAATTGAGTCATTGAGCATGAACAGGGTGGATCAGGGTAGTTTGGATGATGTAGATGTTGCTGAATCTGAAATACCTTGGGAAGATTTGGTCATCGGG GAGCGCATCGGACTAGGTTCATATGGTGAAGTATACCAAGCCGACTGGAATGGCACGGAGGTTGCTGTTAAGAAGTTCCTAGATCAGGGTTTCTATGGTG CAGCATTGTCAGAATTCAAAAGAGAAGTGCGGATCATGCGCAGATTGCGCCATCCAAATGTCGTTCTCTTCATGGGTGCGGTTACTCGTCCTCCAAATCT CTCCATCATTACCGAGTTCCTTCCCAGGGGAAGCTTGTACCGAATTCTCCATCGTCCTCATTGCCAGATTGACGAGAGGCGCAGAATAAAAATGGCTCTC GATGTGGCAAGAGGTATGAATTGTTTGCATAGCAGCACACCGACAATTGTTCACAGGGATTTGAAGTCCCCTAATCTGCTTGTTGATAAAAACTGGAATG TTAAGGTTTGTGATTTTGGATTGTCACGCTTGAAGCACAGCACATTTTTGTCCTCCAAATCGACAGCCGGAACGCCGGAATGGATGGCACCTGAAGTTCT CCGCAACGAACTCTCAAACGAGAAGTGCGACGTGTACAGCTTTGGAGTCATTCTATGGGAGCTCGCGACACTGAGACTGCCATGGAGCGGGATGAACCCG ATGCAAGTCGTCGGTGCAGTCGGATTCCAGAACCGCCGCCTCGAGATACCTAAAGAACTCGATCCTTTAGTTTCGACGATCATCTGGGAATGTTGGCAAA CGGATCCGAACTTGAGACCATCGTTCGCTCAGCTCACCGTAGCCTTAAAGCCGCTGCAACGGCTCATCGTACCGGCTTCCCAGATGGACCAACAGGCAAG TTGA
AA sequence Show only first row Show all	>Lus10004124 pacid=23157539 polypeptide=Lus10004124 locus=Lus10004124.g ID=Lus10004124.BGIv1.0 annot-version=v1.0 MTSTLQSPPVNGGRNSGGADYFASEEEFQMQLALAISASSNSQSGRDDREKDQIRAATLLSLGGNRHHSMDVTGHKGEAAAESLSRQFWEYSVLDYEEKV VDGFYDVFSSSSENQRKMPSLGDLETNSGSSGIEAVVVNRTIDHNLEELGQVAQCIALDCPATDIGTLVHQLAELVTGHMGGPVKDANIMLAKWMEKSTE LRTVLHTSVLPIGSINIGLSRHRALLFKVLADTISLPCRLVKGSHYTGVEDDAVNIIKLEDGREFLVDLMAAPGTLIPADILNTSKVPAPHSFDSGLTRP NSLPGEGPSNAAGVSSSGLSMKVTHSSRVDNPSSATGSSLYEENRGAHAVGGGARMNVNIVPYNQNGSEDTTNLFADLNPLQNKGNFFVHNKPGDNKFEG QRNPVVPNRAPAPLMWKTRYANNEVPGRKEYDYMDGLFPRINRELSNYNQTSAASSSSNVPRKAHPQSSTTFFNSNQAGRDSEPGNSCIGSSSAVASGGS QYQNLPFGEALTSAFNSENRLDSTNWQNSGITREENGETSLPDPRKLTDDRFIGNNLKLKDLESPSSSIESLSMNRVDQGSLDDVDVAESEIPWEDLVIG ERIGLGSYGEVYQADWNGTEVAVKKFLDQGFYGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIITEFLPRGSLYRILHRPHCQIDERRRIKMAL DVARGMNCLHSSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRLPWSGMNP MQVVGAVGFQNRRLEIPKELDPLVSTIIWECWQTDPNLRPSFAQLTVALKPLQRLIVPASQMDQQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	0	1
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	1.4	0.8257
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	2.0	0.7759
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	3.5	0.7651
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	6.7	0.7441
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	9.8	0.7469
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	11.2	0.7336
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	16.2	0.6839
					Lus10036643 [exp]	18.2	0.6388
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	20.5	0.7068
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	20.5	0.7110

Compare expression of checked genes

Lus10004124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.