Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 283 / 4e-94 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 265 / 9e-87 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 254 / 6e-83 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT3G53710 117 / 5e-30 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 116 / 2e-29 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT5G54310 88 / 2e-19 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 83 / 1e-18 AGD15 ARF-GAP domain 15 (.1) AT4G21160 81 / 3e-17 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 80 / 4e-17 AGD13 ARF-GAP domain 13 (.1) AT3G07940 76 / 3e-15 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004562 [exp] 302 / 5e-101 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10000903 [exp] 296 / 2e-99 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 276 / 2e-91 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10023766 [exp] 112 / 6e-28 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003978 [exp] 109 / 5e-27 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 107 / 4e-26 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10000902 [exp] 98 / 2e-23 AT2G35210 201 / 9e-62 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) Lus10027249 [exp] 90 / 7e-21 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 88 / 2e-19 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092300 [exp] 311 / 7e-105 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.001G142100 [exp] 304 / 5e-102 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.016G095100 [exp] 113 / 3e-28 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 112 / 5e-28 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.012G036900 [exp] 90 / 4e-21 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G406300 [exp] 91 / 2e-20 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 91 / 3e-20 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 89 / 7e-20 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 85 / 4e-19 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.004G035800 [exp] 85 / 2e-18 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10004125 pacid=23157538 polypeptide=Lus10004125 locus=Lus10004125.g ID=Lus10004125.BGIv1.0 annot-version=v1.0 ATGGCATCCGACACCGACAGAAATGCTGTGTTGAAGAAACTAAAATCAAAATTTGAGAACAAAGTGTGCTTTGATTGTAATGCAAAGGATCCTACATGGG CATCTGTTACATACGGAGTATTCCTCTGCATCGATTGTTCTGCAGTTCATCGTAGACTTTGTGTGCATTTGAGCTTTGTCAGGTCGACAACGATGGACTG GTGGTCTCCCGAACAGTTGAGAATAATGGCCATTGGTGGAAACAAGCGTGCACGAGTGTTCTTTAAGCAACATGGCTGGAATGATGCCGGTGGGAAGACC GAGGCCAAGTATACATCGAGAGCCGCAGAGTTGTACAGGCAAATTCTGTCCAAAGAAGTCACAACAAGTATGGCTGAAGATGCTCTTGCTTCTCTATCGG TTCAAGGGATCAATGGCCTGTCGGAAGATACGAGTTGTACTGCTAAGAACCCTCTTGGGGCAACAAAGCGAACCGGGAAATCTCGAGGTCTTGGTGTCAG AAAGCTCACCACTAAGTTGCCGCCAAATGAAAATTTGTACGATCAGGAGCCAGAAGAAGCACCTCTTCTTGTTGCATCGTCTTCTGAAAACAACCAGAAA GCAGGGGCTTCTCATTTGGAGTATGCAGATTATGTGCAGCAGCCTGCAGAAGCGGTTTCAGGTGGATCAAATTTGCTTAGCGATGCATCTAATGCAGACA CGAGAATGGAGAAGGAAAGCTCAAATTCCTCTCAAGTGCAGGAAATGATCGAAGAGACTTATGAAGCGAGAAAGATGTATCCAAATGCCAAGGCGATTTC ATCCGACCAATATTTTGCCGACCAAACTGCAAAGTCTGAGGTATGGTTTACAATGATGAATGAATGA
AA sequence Show only first row Show all	>Lus10004125 pacid=23157538 polypeptide=Lus10004125 locus=Lus10004125.g ID=Lus10004125.BGIv1.0 annot-version=v1.0 MASDTDRNAVLKKLKSKFENKVCFDCNAKDPTWASVTYGVFLCIDCSAVHRRLCVHLSFVRSTTMDWWSPEQLRIMAIGGNKRARVFFKQHGWNDAGGKT EAKYTSRAAELYRQILSKEVTTSMAEDALASLSVQGINGLSEDTSCTAKNPLGATKRTGKSRGLGVRKLTTKLPPNENLYDQEPEEAPLLVASSSENNQK AGASHLEYADYVQQPAEAVSGGSNLLSDASNADTRMEKESSNSSQVQEMIEETYEARKMYPNAKAISSDQYFADQTAKSEVWFTMMNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	2.4	0.9246
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	5.7	0.9329
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	5.9	0.8958
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	7.5	0.9211
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	8.4	0.9105
					Lus10024694 [exp]	9.0	0.8996
AT2G45990			unknown protein		Lus10036369 [exp]	10.8	0.8979
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	12.2	0.9172
AT2G47010			unknown protein		Lus10000888 [exp]	12.5	0.8945
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	13.1	0.9053

Compare expression of checked genes

Lus10004125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.