Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08845 263 / 1e-81 Ribosomal L18p/L5e family protein (.1.2) AT3G04960 218 / 4e-61 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G27240 227 / 7e-61 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 191 / 2e-49 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 187 / 9e-49 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G27980 182 / 3e-48 Domain of unknown function (DUF3444) (.1) AT5G18740 178 / 3e-48 Domain of unknown function (DUF3444) (.1) AT3G05110 176 / 4e-48 Domain of unknown function (DUF3444) (.1) AT5G18730 178 / 2e-47 unknown protein AT3G06340 179 / 8e-47 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001726 [exp] 1666 / 0 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 690 / 0 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 684 / 0 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001727 [exp] 374 / 3e-123 AT1G08845 268 / 1e-92 Ribosomal L18p/L5e family protein (.1.2) Lus10042540 [exp] 273 / 3e-77 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 246 / 2e-69 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 249 / 3e-69 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 218 / 6e-61 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 218 / 1e-60 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043200 [exp] 357 / 9e-106 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029300 [exp] 300 / 2e-95 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2) Potri.013G029500 [exp] 271 / 2e-75 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 228 / 1e-61 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 155 / 4e-41 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G221000 [exp] 153 / 3e-38 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 152 / 7e-38 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 152 / 9e-38 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 152 / 9e-38 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 133 / 1e-35 AT5G18730 158 / 1e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CL0267 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10004129 pacid=23157533 polypeptide=Lus10004129 locus=Lus10004129.g ID=Lus10004129.BGIv1.0 annot-version=v1.0 ATGGAATGCAACAAAGAGGAGGCAGTAAGAGCGATGGAACTTGCAGAGAAGAAAATGCAAGCGGGTGACTATGACGGGGGAAGGAAGATGGCCCTGAAAG CGCAAAAACTCTATCCAGACATTGACAATGTGCCTCAATTGTTAGTTGTTTGTGATGTTCATTCTTGTGCTGCTAACAAGATAAACGGTGTGGACCTTGA CTGGTATGCCATTCTCCAGATTGAGCGGTTCTCGAATGAAGCAGTCATCAAGAAGCAGTATAAAAGGCTTGCACTTGCACTTCACCCGGACAAGAACAAG TGCCCTGGTGCGGAGGCTGCTTTCAAACTCATCGGTGAAGCGAACAGAGAACTTACAGACCCAACAAGGCGTTCTCTGTTTGATTCAAAATTTAGAGGGC CGGTAAGGCCAGCTGCACAGAAAGTAACAGTGAAGGAGACTAAAGCGTTTGCTGCAAAGAAGCAACCTAATACGTTGCGTTGTCAACATTGCCAGCAGAC TTTCGTTGCAAATGATGTGGGCCCTGTTGGTCAGGAAGGTTTCGATGTTCAAGGTCCAAGTTATATTGGTCTGCAAAGTAATGGTGCTCGGAACTATGCC TTTGCAGGTGTGGAGTTGAGACCTAGTGGGGGGAATTCTTCTACTGGCGTTCCTGGAATGTCTAAAACTGCTGGTGTCCCGAATGGAAATCACAGTGCAG GAGGAATTGTACGCCGTACTCTCCCCAAGCGTACTGCCAGAAAGCGCTCAGGTCATGCAAATGACAATGGTGGATCTGCTTTGAAAAGGTCGAGGGAGAA AGATAAAAAAGAAAGTCTGTCCAGGAAGAAGAGTAAAATTGGTGTCTCAGAGAAACTGGAGGTAAATGATATTGACAATGGGCATGAATTCGAACTAGGT AGAGAACAGCTTGATTGTCCTGATGTGGAGTTCAGTGATTTCGGCAAAGACAGGTCTGTGAATTGTTTTAATGTTGATCAGATATGGGCTATATATGATG AACTCGATGGTATGCCTCGGTTCTATGCTCAGATCAGGAAAGTGCTGTTATCAGGGTTTAAGCTACAGGTCACTTGGCTGGAGCCTTGTCCTGATACGGA TCGAAAATTTCCCATCTCGTGTGGTGCGTATGAGATTGGAGAACCTGACGAATTAGATCGTCTGGTGTTTTCACATCAAATTTATTGCAATAGAGAGAAA CAGAAGGACCAAGCTTACATGATCTACCCCATGAAGGGGGAGACTTGGGCCCTATTCAAGGATTGGAGTTCTGAACCGGACAAGCTTAGAGCACCGTACA GCTACGAGTTTGTCGAGATTTTATCCGATCTCACGGAGGAAGTTGGTGTTGGGGTTGCTTGTCTAGGCAGAGTGGAAGGCTTTGTTAGCATCTTTCAGAA AGCTACACATGATGGGACTATCTCCTTCTGCGTAAAGCCTTCCGAACTGTGTAGATTTTCGCATCGGATCCCATCACGCAGGATGACCGGGAACGAGAGG GAAGGCGTACCTGCTGATTCTTTCGAGCTCGACACAGCTGCACTTCCTGCTAGTCTTTATAGAAATTTCATCCATGCGCAGCCAAGAAGCGTATATCACA GTGAGGAACCAGCAACTGCAAGGCACAATCAGAAGTCCTGGACAGAGTGGACAGAGAAGTTCAGCGGGAGGAGCATTGTTTGTGGATTATCTGCAGAGAT ACCAACCGGTGCTCGCTCAATGCACAAATCGAGCAATCGAGGTAATTCGAGCCGTTCCAGTGATGTGGCAGCTGCAAGTAGTTCCCAACCCAAAGGAGGA GAAGGGGCAAGTACGTCATTTCAGCCCCAGGTGAAATTCAATTCTGCAGAGATGTCGCCCAGAAGATCTCGTAAGGACTCGAGCAAAGGAAATGGCAATG CTGATGTTAACTCGAACCAACCTCCTATTATTAGCGTGGATGATGATGATGCTGACAAGCAGAAGGATCTACCGGAAGTCCTGGATTCCTCAGCCAAGCG GAAAGTCTCGCTTGAAGTGGAAAAGCACGATTTCAACAAGAAGAGGTCGGAGGACCAGTTCAAAATCGGTCAGATATGGGCGATTCGGAGCAACGAAGAC CAGATGCCGAAGAATTACGCTCTGGTAAAGAAGATTGAACACGCCCCTTTCAGAGTACATGCAGCGGTTCTCGAGTCGTTAGCTTTTGTCAGTGGCTCGA TTCACACTCGCAGCTACGGGTCCTTCAGAGAAGGGAGAACCGAGGTTCTTCCCATCGCTCGTTTCTCGCATGAGGTGGAGCAGACGAGATTGTCAGGGAA GAACAGGGTCGATATCTACCCTAGGAAAGACGAGATATGGGCAGTGTCCAACAAGAGCAATGGAAATGGAGAATGCGAGATTGTCCAGGTGATGGAGAAG AAAGGCGAGAAAGTAGAAGTCATGGCCTTGACGCCATTGAAGAAGTTCAGCGGATTCGAGTCCTTCTACCGATTGCCCAGCAGGAAACCGAAAGCTTCTG TACTGGAGATCAGCAGATTCTCTCATCAGTGTCCAGCTCACTACCACCATAACGTTCTGAATGGATGCTGGGAGCTCGATGCTTCGTCGGTCCCCAGTCA GCAAGGCCATTGCGGTGAAGGGATTGAGCTCATGTTGAAGCAGGCGCTTGGGAAAGTACTGGGCAGAGAAGTTTTGACAAGTTCAATCAGCAAGCTTGGA GCTTTCTCAAATGCTGCCATTAATGGCTTCCACACTGGACAGGCACACAATGCCCCGAGAAGCTTCTTCGGGGTAGAGGACTTCCTGGACGACGACAACA GCAGGCCGTACACTTTCCAGAAGGGCAAAGTGTCGAAGAACCCGAACAAGAGTGTGTCCTTCAAGCAACGCACTCAGGCGTTCATTGAGCCCTTCACCCT GGATGTGTTCATCTCGAAGCGGTTCGTGTCAGCTTCACTCACTCACAGGGTGACTAGCAAGCAGGTTGCTACGGCCGGGACGAACTCTAAGGACATCAAG GCTGCGCTCAAGTCGAGGTCGGACATTCCGGCCTGCCTAGCGATCGGCCGGATTCTGGCCGACCGGGCGAGGGAGGCTGATGTTTTCACTGCCGTCTACA CTCCTAGGGAGAGGGATCGGTTTGAAGGCAAGATTAGGGCTGTGGTTCAGTCTTTGATTGACAATGGGATTGATGTCAAAGTCTATCTTGAGTGA
AA sequence Show only first row Show all	>Lus10004129 pacid=23157533 polypeptide=Lus10004129 locus=Lus10004129.g ID=Lus10004129.BGIv1.0 annot-version=v1.0 MECNKEEAVRAMELAEKKMQAGDYDGGRKMALKAQKLYPDIDNVPQLLVVCDVHSCAANKINGVDLDWYAILQIERFSNEAVIKKQYKRLALALHPDKNK CPGAEAAFKLIGEANRELTDPTRRSLFDSKFRGPVRPAAQKVTVKETKAFAAKKQPNTLRCQHCQQTFVANDVGPVGQEGFDVQGPSYIGLQSNGARNYA FAGVELRPSGGNSSTGVPGMSKTAGVPNGNHSAGGIVRRTLPKRTARKRSGHANDNGGSALKRSREKDKKESLSRKKSKIGVSEKLEVNDIDNGHEFELG REQLDCPDVEFSDFGKDRSVNCFNVDQIWAIYDELDGMPRFYAQIRKVLLSGFKLQVTWLEPCPDTDRKFPISCGAYEIGEPDELDRLVFSHQIYCNREK QKDQAYMIYPMKGETWALFKDWSSEPDKLRAPYSYEFVEILSDLTEEVGVGVACLGRVEGFVSIFQKATHDGTISFCVKPSELCRFSHRIPSRRMTGNER EGVPADSFELDTAALPASLYRNFIHAQPRSVYHSEEPATARHNQKSWTEWTEKFSGRSIVCGLSAEIPTGARSMHKSSNRGNSSRSSDVAAASSSQPKGG EGASTSFQPQVKFNSAEMSPRRSRKDSSKGNGNADVNSNQPPIISVDDDDADKQKDLPEVLDSSAKRKVSLEVEKHDFNKKRSEDQFKIGQIWAIRSNED QMPKNYALVKKIEHAPFRVHAAVLESLAFVSGSIHTRSYGSFREGRTEVLPIARFSHEVEQTRLSGKNRVDIYPRKDEIWAVSNKSNGNGECEIVQVMEK KGEKVEVMALTPLKKFSGFESFYRLPSRKPKASVLEISRFSHQCPAHYHHNVLNGCWELDASSVPSQQGHCGEGIELMLKQALGKVLGREVLTSSISKLG AFSNAAINGFHTGQAHNAPRSFFGVEDFLDDDNSRPYTFQKGKVSKNPNKSVSFKQRTQAFIEPFTLDVFISKRFVSASLTHRVTSKQVATAGTNSKDIK AALKSRSDIPACLAIGRILADRAREADVFTAVYTPRERDRFEGKIRAVVQSLIDNGIDVKVYLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	0	1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	1.4	0.8821
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	1.7	0.8581
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	2.2	0.8878
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	3.5	0.8550
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	5.9	0.8514
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	7.5	0.8009
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	8.5	0.8438
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10018144 [exp]	8.5	0.8403
AT5G44150			unknown protein		Lus10018632 [exp]	9.9	0.8369
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	10.0	0.8392

Compare expression of checked genes

Lus10004129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.