Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 372 / 3e-122 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001725 [exp] 977 / 0 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10033981 [exp] 377 / 1e-124 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 366 / 2e-120 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 342 / 5e-112 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 216 / 4e-65 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043400 [exp] 665 / 0 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 660 / 0 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 480 / 2e-165 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.010G019000 [exp] 375 / 5e-124 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 360 / 3e-118 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 174 / 1e-50 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF08501 [flax] [poplar] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase
Representative CDS sequence Show only first row Show all	>Lus10004130 pacid=23157512 polypeptide=Lus10004130 locus=Lus10004130.g ID=Lus10004130.BGIv1.0 annot-version=v1.0 ATGGGTCTGATGGGTCGGGTCGGGAGTCGGGTTGCTGCTCCGTTGGTTTGTGCGACGGTGATGAAGAAATCCGTTGAGCAAGTGGTGGATGAAATGCAGG CTGCCAAGGCTCAAGGTGCTGACGTTGTGGAGGTCAGGCTTGACGTCATCAATGGCGGTTCTTCTTCTGGTGAGCTGGAAATCTTGTTGCGGGATAAGGC ATTGCCTGTTATCATTGTTTGCAGGCCTAAAGGGGAAGGTGGTGAGTATGAAGGAGAAGAGAATTCAAGGTTGGAAACTCTTTACTTGGCTTCTCAATTG GGTGCTGTAGGATCTTTGTTCGGTATAGTACCGTTAATCTTACCGGCTGCTTCTTCTGGTGTGATGGAAGAACTGAGGAAGAGAAGGCATTTCAACAGCA AGATCATTGTGTCCGGCAATTTGAATGGTCCAACTTCTTCAAAGGAAAATCTGACCAAGTTGGTTAGATCCATGGCGGCTCTGGAACCAGACATCATCAA GATTGTATCGAATGTGGATAGCATCACGGAGATTGAGAGGATCTTTCATCTGACTTCCAATTCTCAGGCATGGACATTATTCCACTGTTTATGTTTTTGT GACATCGTTCTACCGTTAGACTCACTGGTGCCAATAGTTGCATACTCGGCCGGGGAAAGAGGTCTGATAAGTCAAATACTGACCCCCAAATACGGTGGAG CTTTAGTCTATGGATCCATGGAAGGAAAACCGGTTCCCGGGTTGCCTACTTTAACCAGCTTGAGAGAAGAAGCCTATGAAGTTGAGTGCATTAACTCAGA GACACAAGTTTTCGGACTGATTTCGAAACCGGTTGGCCACAGTAAAGGCCCCTTGCTGCATAATCCTGCTTTCAGACATGTGGAGTACAATGGAGTCTAT GTCCCTATGTTCGTTGATGATCTCAGAGAGTTCTTTGAAGCTTATTCTCATCCTGACTTCCATGGATTCAGTGTTGGGTTTCCATACAAAGAAGCTGTTG TGGAGTTCTGTGATGAAGTCCATCCACTTGCCAAGACTATAGGTGCTGTTAACACCATAGTGAGAAGAACAAGTGATGGGAAGTTGATAGGTTACAATAC AGACTGTGAAGCTTCAATAACAGCCATTGAAGATGCTCTCAAAGAACAGGGAGACTCCAATGGAAGTGTGGTGGCTTCTTCCAAGTCTCCACTCGCAGGG AAGCAGTTTGTCCTTGTTGGAGCTGGAGGAGCTGGAAGGGCGCTTGGCTTTGGTGCCAAGACAAGAGGAGCCCGTGTCTTAATTTTCGACATTGATTTCT TGAGGGCCAAGTCACTGGCTAAGGATGTCTATGGCGAAGCACGCCCTTTTGAGACCCTGCCAAGTTTCGAGCCTGAGGATGGTGCAATTCTTGCTAATGC CACACCGGTAGGGATGCATCCGAGCACGGACAGGATCCCTGTTGCTCAGGCGAGCTTGGCGAGATACAGAGTGGTGTTCGATGCAGTGTACACTCCGAGG AAGACGAGACTGTTGAAAGATGCTGATGCTGCTGGTGCAATCATTGTGAGTGGAGTTGAGATGTTCCTTAGACAAGCCATTGGACAGTTCAAACTCTTCA CTGGCAAACAAGCACCTGAAGATTTCATGAGGGAGATTGTTATGGCCAAGTTCCGAGTTCATCACAAAAAAACTATACAGTAA
AA sequence Show only first row Show all	>Lus10004130 pacid=23157512 polypeptide=Lus10004130 locus=Lus10004130.g ID=Lus10004130.BGIv1.0 annot-version=v1.0 MGLMGRVGSRVAAPLVCATVMKKSVEQVVDEMQAAKAQGADVVEVRLDVINGGSSSGELEILLRDKALPVIIVCRPKGEGGEYEGEENSRLETLYLASQL GAVGSLFGIVPLILPAASSGVMEELRKRRHFNSKIIVSGNLNGPTSSKENLTKLVRSMAALEPDIIKIVSNVDSITEIERIFHLTSNSQAWTLFHCLCFC DIVLPLDSLVPIVAYSAGERGLISQILTPKYGGALVYGSMEGKPVPGLPTLTSLREEAYEVECINSETQVFGLISKPVGHSKGPLLHNPAFRHVEYNGVY VPMFVDDLREFFEAYSHPDFHGFSVGFPYKEAVVEFCDEVHPLAKTIGAVNTIVRRTSDGKLIGYNTDCEASITAIEDALKEQGDSNGSVVASSKSPLAG KQFVLVGAGGAGRALGFGAKTRGARVLIFDIDFLRAKSLAKDVYGEARPFETLPSFEPEDGAILANATPVGMHPSTDRIPVAQASLARYRVVFDAVYTPR KTRLLKDADAAGAIIVSGVEMFLRQAIGQFKLFTGKQAPEDFMREIVMAKFRVHHKKTIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10004130 [exp]	0	1
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	3.5	0.8982
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	5.5	0.8780
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	6.9	0.8650
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	7.5	0.8679
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	9.2	0.8628
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	9.8	0.8226
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	12.7	0.8352
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	14.3	0.8382
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	16.5	0.8316
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	17.3	0.8092

Compare expression of checked genes

Lus10004130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.