Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48385 72 / 9e-13 FRIGIDA-like protein (.1) AT5G27220 64 / 5e-10 Frigida-like protein (.1) AT5G27230 61 / 3e-09 Frigida-like protein (.1) AT1G31814 59 / 1e-08 FRL2 FRIGIDA like 2 (.1) AT4G00650 48 / 2e-05 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1) AT3G22440 48 / 3e-05 FRIGIDA-like protein (.1) AT4G14900 47 / 7e-05 FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001723 [exp] 768 / 0 AT5G48385 / FRIGIDA-like protein (.1) Lus10033828 [exp] 270 / 3e-75 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10001724 [exp] 203 / 2e-61 AT4G36020 41 / 4e-05 cold shock domain protein 1 (.1) Lus10038038 [exp] 192 / 4e-50 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10009979 [exp] 186 / 4e-48 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10004132 [exp] 113 / 1e-25 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10042965 [exp] 90 / 3e-18 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10018975 [exp] 87 / 3e-17 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033831 [exp] 86 / 1e-16 AT5G27220 153 / 2e-37 Frigida-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043900 [exp] 175 / 1e-44 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 170 / 1e-43 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 166 / 1e-42 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.002G206200 [exp] 84 / 1e-16 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.007G050800 [exp] 83 / 5e-16 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 77 / 2e-14 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 77 / 2e-14 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.005G044200 [exp] 73 / 6e-13 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.015G110066 [exp] 43 / 0.0006 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10004131 pacid=23157510 polypeptide=Lus10004131 locus=Lus10004131.g ID=Lus10004131.BGIv1.0 annot-version=v1.0 ATGGACGAAAGGCGCTTGGTAGTTGGACAAGACGTTTCAGTCGGCGGCGACGGCGGTGCAGGGTCGAGAACGGTGCATGGAGGAGACACGATAGGCCAAC TCCGGGACCGCGCGTCATGGATAGCATCTTTCGCGGCGCAGTTGGACTCCACCGCGGCGGCGCTCAACGCTCGATCGGAGGAGGTGCGGCGGGCGGAGGC GGAGGCGGCGGAGAGGCTTAAGGAAGTCGTGATGAAGGAGGAGGCGTTCGAGTTGATGATGAAGACAGAGATGGAGAAGCTGAAGGAGCAGGAGGATTCC GCAGAGAGGTTGAAGACGCAGAGCGCGTCGGAGAAGGCGATTGTGGAGGCGAAGTTGAAGGAGCTCGCGGATAAGGAGGAGGAGTTTGAGGCGCTCGGTA GTTACGTCGAGTTGAGAGCGATTCGTGTTCGGGAAGCGGTGGAAGAGATTGACGGGAAGAGGAAGGAGTTGGAGGCGAGAGAGGCGGAGATTGAACTGAA GAGAAAGGAGTTGGAAGAAAAATCGGCGGAGTTCCGGCGGAAGCAGGTCGAATTTGAGGTGCGTGTTATTGAATCGAGTGTCAAAGAGAGGGGAAATGGT GAGGAAGATTTGAATGGTGAATTTGAGGAGAGAGTGAATGAATTCAATAGAAAGGATTCGGAATTAAAATTGCGTTTGGATGAGTTGAACAAAAAGGAGA AGGAGGTAAATGATAGGGAGAAAAATTCCAGAGAGCTTGAATGTAGATTAGAACAGTCGTTGGGAAATTTCAAGTTGCTCGAAGACGAGTTTCGAGATCG ATTAGTGGAGTTTAAAGCAAAGGAGGTCGAGTTCAGCAAGAAGGAGAAGGAGATAGATGATAGGGAGAAACAGTGCAGAGAGCTTGAATGTAAAGTAGAA CAGTCGTTGGAAGAGTTCAAGGAGCTCGAGAAGGGGTTTCGATATCGATTAGTGGAGTTGGAAGCAAAGGAGGCCGAGTTGAACAAGAGAGACAGGGAGA TTGATGAGAGGGAGAAACGGTGTGAAGAAGCAGAGTGTAAAGCTCGACAGTCGCAGGAGGAGTTTAATGTGATCCAGAAGGGGTATCAAGATCGGACGGC GAAGTTAAAAGCAAACGAGGTGAAGTTCGAGGAGTCTGTGCAAGGATTGAAAGAGAAAGAAAGGGATATAGAGGAGAAAGAGAAGGCTGTTGAGGAAAGG ATTAAGGTTATCAAAGTGAGGGAGGAAGGGCATCAGAAGAATGTGGAGGAGTTTGAAGTCAAAGTCCGACAATGGTACGATGATACCAAGGCTAAGGAGA TTCGGTTTCTTGGGTTAGAGGAGAAAGAGAAAGGTATTGAGCAAAGGCTCAAGGACGTTAAAGCGAGGGAGGAAGCGCATGAAAAGAAACTCGAGGAGTT TCGAGTCCAAGTCAAGGGTTGGTATGATGATCTCGAGGCCAGGGAGACAAGTTTACTTGTGCAATCTAATAATGTCAAGGCTAGAGAGACAAGAATGGTT GAGCAATTTGATGAGTTTAGACAGGAAATAGCCTTGTTTGTGGAAGCTTCGAATAGTTTAAAAGCTAGAGAGAAGGAAATTGATGCCAGAGATATGGTGT CTAGGAGATTAGAATCGGAGCTGAAATCGAAAGATGAGCAATTAGTGCTGAATGCAGAGTCGCGTATGTCTCAGATGAAGGTTGAGCCGATGGTTGCTTC CAGTTCGTCAGGAACGACGAAGGACAAGCAGGGAGTTGAGATTTCCAACAGAGATTCTGCACGAAAAGCAGATTCAACTTCGTCGCAAGCGAAGGTAGAA GGGATAGATGCTGCGCCCAGTTCATCAGATAATCCATCAGAAGGGATCATTAGGTTCAGCGTTATAATGACTGGAAAAGACCTGCAAATTTTCTTGAATG AACGTTCCAAGGAACTGCGTTCAATGGCGAACGAAGTGGACAGTGCGCTGAAACTTTCATCAGACCCTGCGAATCTCGTGTTGGATGCAATGGAAGGATT CTACCCTCCCCATATGAAGAAAGGGGACTTCGAGTTTGAAACCGGTGTGATCAGAAAGACTTGCGTAATGCTCTTGGAAAGGTTGAAAAAGATTTCTCCG GTTATCAAACCGCACATTAGACAGAAAGCGGAGAAAATAGCATCTGAATGGAGGGCAAAAATGAAACCTGATGGTGACAATGGCTGGGAAGTCCTAGCCC TTATGCTGCTCTTGGATGTGTACGGATTAGCCTCCGATTATCAGAATGATGAACTCGTTACTCGGTTGGGCGCTCAATACGGGCAGACTCGCAAACCTGT TGACAACATCTCGAGTCGAAGAACTCAGAACCCTGTTCAAAAGAAGCAGCATAACAAAGTTTCTGCATCTGAGTCGGATTTACCGATACCACTTACACCT GTCGCTCCGTCCTTGAATCCTGTTTCGGCCACCACTCCCACTTCGCAGACTTCTGCAAGTGAGTCGAGTGGTTGTGGCGGTAAACGCTCGTCGTCAGCTA CATGTACGGATGGTAACGGCATCTCGAAACGAGCGAAACAACCACAACAGAAGGCGCCACCATGTGCTCATGGCGCAAAATACCACTCGGGAGAGTGTCG ATCAAAGGCAGCGGCCACAACCCAGCATCCACTGTGTGCTCACTGCAGCAAACGGCACCAAGGGGATTGCCGTCTCCTATCAGATCAATGCTTCAATTGC GGAGACTCGGGCAACATTTCATGTAATTGCCCTCGCGCTAAGGGTGAGGCCAGTTTGAAGGAATGCCACAAATGTGGGGCTAAAGGTCATTTTGTGCAGA ATTGCCCCTTCGGTAAAGGCTGA
AA sequence Show only first row Show all	>Lus10004131 pacid=23157510 polypeptide=Lus10004131 locus=Lus10004131.g ID=Lus10004131.BGIv1.0 annot-version=v1.0 MDERRLVVGQDVSVGGDGGAGSRTVHGGDTIGQLRDRASWIASFAAQLDSTAAALNARSEEVRRAEAEAAERLKEVVMKEEAFELMMKTEMEKLKEQEDS AERLKTQSASEKAIVEAKLKELADKEEEFEALGSYVELRAIRVREAVEEIDGKRKELEAREAEIELKRKELEEKSAEFRRKQVEFEVRVIESSVKERGNG EEDLNGEFEERVNEFNRKDSELKLRLDELNKKEKEVNDREKNSRELECRLEQSLGNFKLLEDEFRDRLVEFKAKEVEFSKKEKEIDDREKQCRELECKVE QSLEEFKELEKGFRYRLVELEAKEAELNKRDREIDEREKRCEEAECKARQSQEEFNVIQKGYQDRTAKLKANEVKFEESVQGLKEKERDIEEKEKAVEER IKVIKVREEGHQKNVEEFEVKVRQWYDDTKAKEIRFLGLEEKEKGIEQRLKDVKAREEAHEKKLEEFRVQVKGWYDDLEARETSLLVQSNNVKARETRMV EQFDEFRQEIALFVEASNSLKAREKEIDARDMVSRRLESELKSKDEQLVLNAESRMSQMKVEPMVASSSSGTTKDKQGVEISNRDSARKADSTSSQAKVE GIDAAPSSSDNPSEGIIRFSVIMTGKDLQIFLNERSKELRSMANEVDSALKLSSDPANLVLDAMEGFYPPHMKKGDFEFETGVIRKTCVMLLERLKKISP VIKPHIRQKAEKIASEWRAKMKPDGDNGWEVLALMLLLDVYGLASDYQNDELVTRLGAQYGQTRKPVDNISSRRTQNPVQKKQHNKVSASESDLPIPLTP VAPSLNPVSATTPTSQTSASESSGCGGKRSSSATCTDGNGISKRAKQPQQKAPPCAHGAKYHSGECRSKAAATTQHPLCAHCSKRHQGDCRLLSDQCFNC GDSGNISCNCPRAKGEASLKECHKCGAKGHFVQNCPFGKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48385			FRIGIDA-like protein (.1)		Lus10004131 [exp]	0	1
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	1.0	0.8729
AT1G27435			unknown protein		Lus10012558 [exp]	9.9	0.7037
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	10.3	0.7872
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	12.5	0.7353
AT5G27220			Frigida-like protein (.1)		Lus10027763 [exp]	12.8	0.6731
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	13.6	0.7372
					Lus10006375 [exp]	18.4	0.7013
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	22.0	0.7364
AT3G58110			unknown protein		Lus10039903 [exp]	22.8	0.6992
					Lus10034993 [exp]	25.6	0.7526

Compare expression of checked genes

Lus10004131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.