Plant FIBer expression Database

Lus10004134 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10004134 pacid=23157518 polypeptide=Lus10004134 locus=Lus10004134.g ID=Lus10004134.BGIv1.0 annot-version=v1.0
ATGTACCTAATCTTCCTTATGTTTTGCCATGTCGACGAGCAGGTTCCTTTGTTGTCCGCATTAAGGCCTGAGGGATTGCTGCGGGCAGGAATGATGCAAA
GCTCCGGTAAGCTGCATCAGGTACTTCTCATCACTACCCTTGTGTCGAGCATGGAGATCAACATTACGAACTTAAATTCGTGGAAGAAGTATGTAGGTTT
TGTTGTGGATGACGAACCAGAAACAGTTGCACTACCTGTAGAGAAATTTGTTCCCTGTTGGATTGCCCTTGTATTAACCAACCGGGAAATGTGCTTCACA
CTTCTGTTTCGAGTGAAAGCTTTGTATTTAGTACCCTGTAACTTAGCCATCATTTCGGACCTGAAAAGAAAGAAGCAGAAGCTTCAGCGATATGCGAGGT
GCAATTACTCTACTACTGCTCCAGTCGCGACCAACCTCAACATCCTCAGTCCAACCACCAACAAAATAGCTGCTTCCTCTTGGACACCCGTGCAGAAGAA
CATCGGTGGTGGTGTTTCTGCTACTCCAACTCCAGTTGCTGCCTCTTCGTTACCAGCACATAATAAGTCTGGCGGTGGTGCTGCTACTCCAACTCCAGGT
GCCTCTTTGTCACTGGCAGAGAAGAGCACTGGTGGTGGTGTTGCTACTCCTGTCGCAATCAACCTAAGCTCCTCCCCACCTGTGTCATCCTCCGGTCCAA
CCACGAACGATGTAGCTGCCTCATCTACGATAGCCATGCAGAAGAACGGTGGTCCTGTGGCTGTTGTTGCTACTCCAACTCCAGCTGTGACGAACCTCAA
CACCACCCCTCTTGTTCCGTCCTCCGATCCATCCACCACCAACGATGTAGCTGCCTCCTCTTCGCAACCGGACAACGAGCTTGACGCTGTTCAGAAGTTC
AAAAGAAAGAAAGTAATCCCGTAA
AA sequence
>Lus10004134 pacid=23157518 polypeptide=Lus10004134 locus=Lus10004134.g ID=Lus10004134.BGIv1.0 annot-version=v1.0
MYLIFLMFCHVDEQVPLLSALRPEGLLRAGMMQSSGKLHQVLLITTLVSSMEINITNLNSWKKYVGFVVDDEPETVALPVEKFVPCWIALVLTNREMCFT
LLFRVKALYLVPCNLAIISDLKRKKQKLQRYARCNYSTTAPVATNLNILSPTTNKIAASSWTPVQKNIGGGVSATPTPVAASSLPAHNKSGGGAATPTPG
ASLSLAEKSTGGGVATPVAINLSSSPPVSSSGPTTNDVAASSTIAMQKNGGPVAVVATPTPAVTNLNTTPLVPSSDPSTTNDVAASSSQPDNELDAVQKF
KRKKVIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10004134
[exp]
0 1
AT2G34585 unknown protein Lus10038503
[exp]
1.4 0.8157
AT4G00860 AT0ZI1, ATOZI1 Arabidopsis thaliana ozone-ind... Lus10012194
[exp]
5.2 0.7854
AT1G26355 SP1L1 SPIRAL1-like1 (.1) Lus10004642
[exp]
5.3 0.7859
AT4G14010 RALFL32 ralf-like 32 (.1) Lus10023223
[exp]
22.0 0.7596
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Lus10032349
[exp]
28.9 0.7814
AT3G07480 2Fe-2S ferredoxin-like superfa... Lus10009565
[exp]
29.8 0.7695
AT5G11280 unknown protein Lus10002898
[exp]
31.1 0.7647
AT3G22950 ATARFC1 ADP-ribosylation factor C1 (.1... Lus10006632
[exp]
34.4 0.7127
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Lus10033934
[exp]
49.0 0.7552
AT4G31300 PBA1 N-terminal nucleophile aminohy... Lus10020180
[exp]
52.5 0.6986

Lus10004134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.