Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018981 [exp] 303 / 8e-107 AT3G05000 285 / 5e-100 Transport protein particle (TRAPP) component (.1) Lus10033832 [exp] 299 / 2e-105 AT3G05000 285 / 1e-99 Transport protein particle (TRAPP) component (.1) Lus10001721 [exp] 296 / 2e-102 AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031000 [exp] 296 / 3e-104 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 281 / 4e-98 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10004135 pacid=23157541 polypeptide=Lus10004135 locus=Lus10004135.g ID=Lus10004135.BGIv1.0 annot-version=v1.0 ATGGGGAGAGAAGTGTCGGAGAGCTGCGTCGACAGTTTACTCACCGAAATGGTGTCGTTGTACTGCAGTCGGTTATACGCTAATAAGCCCGAGCTCGCCG CCCGCCGGATTGAGGCCATCGGGTACCAAGTCGGCCACCAGCTCTCCGAGCGGTACACAATGGAGAGACCTCGGTTTAATGATCATCTAGAGGCGATAAA GTTCATCTGCAAGGACTTTTGGTCCGAGCTTTTCAAGAAGCAGATAGATAACTTGAAGACAAACCATAGAGGAACCTTTGTGTTGCAAGACAATCGGTTT CGTTGGCTTGGAAGGATGTCACTAGATTCGACAAGTGAGAAAGGTCTTCCTCAGGACCCTGCTGCATTGGCTGAAGATAAGACAGCTCAAGCAATGAGCA TGTATCTATATTTCCCCTGTGGAATCATCAGAGGAGCTCTTTCAAACCTCGGGATCTCTTGTGCCGTTTCGGCCGATATTTCTGCATTACCAGCTTGTAT GTATACCCTAATCACGGTGTCTCCTGTAGCTGTAGCTTTACTCTAA
AA sequence Show only first row Show all	>Lus10004135 pacid=23157541 polypeptide=Lus10004135 locus=Lus10004135.g ID=Lus10004135.BGIv1.0 annot-version=v1.0 MGREVSESCVDSLLTEMVSLYCSRLYANKPELAARRIEAIGYQVGHQLSERYTMERPRFNDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRF RWLGRMSLDSTSEKGLPQDPAALAEDKTAQAMSMYLYFPCGIIRGALSNLGISCAVSADISALPACMYTLITVSPVAVALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	1.4	0.8043
					Lus10013070 [exp]	2.2	0.7723
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	4.5	0.7939
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	6.0	0.7385
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	6.9	0.7843
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	8.9	0.7510
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	11.8	0.7798
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	12.6	0.7374
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	14.5	0.7711
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	16.2	0.6967

Compare expression of checked genes

Lus10004135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.