Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08630 268 / 6e-78 unknown protein AT4G25070 234 / 2e-66 unknown protein AT5G13260 224 / 2e-64 unknown protein AT3G48860 219 / 2e-62 unknown protein AT5G23700 200 / 1e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001720 [exp] 1078 / 0 AT4G08630 471 / 5e-155 unknown protein Lus10032546 [exp] 244 / 2e-72 AT3G48860 595 / 0.0 unknown protein Lus10043194 [exp] 239 / 7e-70 AT3G48860 684 / 0.0 unknown protein Lus10036015 [exp] 238 / 1e-69 AT3G48860 675 / 0.0 unknown protein Lus10016721 [exp] 235 / 3e-68 AT3G48860 674 / 0.0 unknown protein Lus10001801 [exp] 228 / 1e-65 AT5G13260 591 / 0.0 unknown protein Lus10002574 [exp] 210 / 4e-59 AT5G13260 566 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044600 [exp] 314 / 2e-96 AT4G08630 436 / 5e-142 unknown protein Potri.001G065800 [exp] 245 / 4e-72 AT3G48860 528 / 0.0 unknown protein Potri.012G105400 [exp] 242 / 6e-71 AT3G48860 546 / 0.0 unknown protein Potri.003G164100 [exp] 239 / 1e-69 AT5G13260 529 / 0.0 unknown protein Potri.015G104600 [exp] 210 / 7e-59 AT3G48860 452 / 3e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004138 pacid=23157525 polypeptide=Lus10004138 locus=Lus10004138.g ID=Lus10004138.BGIv1.0 annot-version=v1.0 ATGGATAGCCGGTACCGGAGGCAGAGGAACAACAGCATGGCGGCAGCGCCGTCTTCGCCAACCGTGTCATCGTCGTCTTCTCCGATGCATGTTCGGACGG GATCTAGCGGCGCTGTAGTCAAGAAGGCGCAGACGAAGGCAGCGGCGCAGAGGCTCGCTCAGGTGATGTCGAACCAGCGTCCGGACGACGATAGTGGGGA AGACGACGACGAGCCGATATTCGCCGGCGGTGGCCTTGGCCTCGCTGGTGGAAGGAAAGTCCAGCCTCGGTCACCGATGACGAGACGTGTAGTTCAGAGC CGTGTACAGATGAGGTCATCCTCGGTGGCGTATGAGGAGAGTAGTGACAATGACGATGATCTTGCTCCAGTGTCTGTCTCGATTGGGCGAGGGGTTGGAA GGTCAATGCGATCAAATTCTCCAATGGGCCGACCTGGGACTCAAAGTCGCGTGCTAGGGAAGCCACCCCAGCCGGTTGATGAGGACAGTGACATGGACGA TAACTCATCCACAAGTGGTCAGGTCTCTATCGGTCATGCAGGTGGAAGATCAATGCGACCTCAATCCCCCATGATGAAACCAGGAGCTCATATTCGTGCC CAAGTGAAGACAACAACCCAACCTCTAAGTGATAGGGATAGTGATAAAGATGAACATAGCCCAGTCAGTGTTGCAGTATCGATTGGGCATGGTGGGGGCC GGTCAATGCAAGCACGCCCTTCAATGGGTAGGCCTGTTGCTCAGTTTCGTGCACCCATGAAGACAGCTGCACCAGCTGACGAGGACAGCGATAGGGACGA TAGCTACAGCCCTGTAAGCGACAGGGTATCGATCGGCCAAGCTGGTGGAAGGTCAATTCGAGGGCATTCTCCAATGGCAGTTCGTAACAGGCAAGACCAG TTGAGCTCTATAAGGATTGGTCGGCCATCTGTACCCTCCAACTCTGGGGAGCAACAGCCATCATTACTTCAATCAACTTCATCCGCACCAGCATTTCAGA TCATCAGTTCCATGGAACAGCCCCACTCTGCTCGGTCTACATGTGAAGATCCTTCATCAGCTCGTTCTACAGCTGGCCGTTCAGGTCCTCCAGGAATCCG GACAATACCTTCAAGTGTAAACATCTCACTAAGGCCAGTTTCTTCTTTCATGTCCTCTGATCCTACTCCAGACAATTGGAAAGAACAAAGATTGAGTGAG CCAAACAGCAATCGGCCTGCATCTGCATTACAAGATGAGATCGACATCCTACACGAGGAAAATAATGGCTTACTTGAGAAGCTTCGACTTGCAGAAGAGA GGCAGGAAGAAGCTGAGGCTAGAGTTCGCCAACTTGAACAACAGGCTGCTTTGAGGATGGCAGAAGTGACTAACAAAGCTGAAGAGATGAACTCCCTTAA GATGGAAGCTGAGAGTGCTAAGGAGGAAGCAGCAGCTGCATACGAGCAGATGCAAGAAGCTGCCTTGGAGGCCAAGTCACTTCGCAACATGACTCAAAGA ATGGTGTTGACAGAGGAGGAAATGGAAGAGGTTGTTCTCAAGAGGTGCTGGCTTTCTCGGTATTGGAGCTTATGTCTTCAACATGGCATTCATGCGGAGA TTGCCAAAGCAAGATACGGGTACTGGTCATCATTCGCTCCACTGCCTGATGATGTGGTTTTAGCTGCAGGGCAGAGAGCTCAATCTGACGAACCATTCAT AGGCAATGACGCTGAGGAAAGGCAGAAAGTTCTGCAAGGTACTGAAGAACTCTCCGGCGAAGGCAACATTGAGAGCATGGTCTTGGTCGAGAGAGGCCTC CGGGAAATGGCTTCGTTGAAGGCTCATCGTTTCGATCATGTGAAGGTCGAGGATGCTTTAGCACTTGTCATGGCTCAGAAACGGCGCCCAACTTCAACCA AAGCTGAGGACGTGAGACTACCTAGTGAAGGACAGTACGAAGCATTTGAACTGAGTCAAGAGGAATCGAAGGACGTACTTTTCAGACAGGCTTGGATTAC ATACTTCTGGAGAAGAGCCAAGGACCACGGGACGGAATCAGACCTAGCGGAAGAGCGACTAGGTTTCTGGCTCAACCGTAGCGGTCGATCCTCTTCGTCG CAGGATGCCGTTGAGGTGGAGCGTGGGCTTCAGGAATTGAGGAAACTGGGCCTTGAGGATCAGCTGTGGCACGGGTCACGTGATGGTCTCGATTACGGAC CCAGCTCCAAGGCCCGTTTGGCCAACGACTTTTGA
AA sequence Show only first row Show all	>Lus10004138 pacid=23157525 polypeptide=Lus10004138 locus=Lus10004138.g ID=Lus10004138.BGIv1.0 annot-version=v1.0 MDSRYRRQRNNSMAAAPSSPTVSSSSSPMHVRTGSSGAVVKKAQTKAAAQRLAQVMSNQRPDDDSGEDDDEPIFAGGGLGLAGGRKVQPRSPMTRRVVQS RVQMRSSSVAYEESSDNDDDLAPVSVSIGRGVGRSMRSNSPMGRPGTQSRVLGKPPQPVDEDSDMDDNSSTSGQVSIGHAGGRSMRPQSPMMKPGAHIRA QVKTTTQPLSDRDSDKDEHSPVSVAVSIGHGGGRSMQARPSMGRPVAQFRAPMKTAAPADEDSDRDDSYSPVSDRVSIGQAGGRSIRGHSPMAVRNRQDQ LSSIRIGRPSVPSNSGEQQPSLLQSTSSAPAFQIISSMEQPHSARSTCEDPSSARSTAGRSGPPGIRTIPSSVNISLRPVSSFMSSDPTPDNWKEQRLSE PNSNRPASALQDEIDILHEENNGLLEKLRLAEERQEEAEARVRQLEQQAALRMAEVTNKAEEMNSLKMEAESAKEEAAAAYEQMQEAALEAKSLRNMTQR MVLTEEEMEEVVLKRCWLSRYWSLCLQHGIHAEIAKARYGYWSSFAPLPDDVVLAAGQRAQSDEPFIGNDAEERQKVLQGTEELSGEGNIESMVLVERGL REMASLKAHRFDHVKVEDALALVMAQKRRPTSTKAEDVRLPSEGQYEAFELSQEESKDVLFRQAWITYFWRRAKDHGTESDLAEERLGFWLNRSGRSSSS QDAVEVERGLQELRKLGLEDQLWHGSRDGLDYGPSSKARLANDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08630			unknown protein		Lus10004138 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	7.4	0.9254
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	10.5	0.9247
					Lus10013255 [exp]	13.1	0.9116
					Lus10013259 [exp]	15.1	0.9116
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	16.9	0.9116
					Lus10027558 [exp]	17.2	0.7595
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	18.5	0.9116
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	19.6	0.8163
					Lus10024141 [exp]	20.0	0.9116
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	21.4	0.9116

Compare expression of checked genes

Lus10004138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.