Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08830 254 / 3e-88 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 200 / 9e-67 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT2G28190 194 / 6e-64 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G12520 57 / 2e-10 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001719 [exp] 283 / 5e-98 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10016155 [exp] 197 / 7e-65 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10021410 [exp] 190 / 8e-62 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10010651 [exp] 191 / 9e-61 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10013615 [exp] 174 / 1e-54 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10006686 [exp] 62 / 4e-12 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3) Lus10007031 [exp] 62 / 7e-12 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044400 [exp] 273 / 7e-96 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G031100 [exp] 262 / 2e-91 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.013G056900 [exp] 204 / 2e-68 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2) Potri.019G035800 [exp] 202 / 6e-68 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.004G216700 [exp] 201 / 2e-66 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.009G005100 [exp] 191 / 1e-62 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.003G118400 [exp] 57 / 5e-10 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3) Potri.001G113800 [exp] 53 / 7e-09 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [flax] [poplar] Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence Show only first row Show all	>Lus10004139 pacid=23157515 polypeptide=Lus10004139 locus=Lus10004139.g ID=Lus10004139.BGIv1.0 annot-version=v1.0 ATGGTGAAGGCAGTTGCAGTCCTTGGAAACAGTGATGGCGTCAGTGGCACCATCTTCTTCAGTCAGGAAGGCGATGTTCCAACCACTGTAACTGGAAACA TCTCTGGCCTTAAGCCAGGACTCCATGGCTTCCATGTCCACGCCCTTGGTGACACCACTAACGGCTGCATGTCCACTGGACCCCACTTCAACCCTCAAGG AAAGGAACACGGTGCTCCTGAGGATGAACACCGCCATGCCGGTGACCTTGGAAACGTTACCGTTGGAGATGATGGTACTGCCACTTTCACCATCATTGAC AAGCATATTCCTCTCACCGGTGCAAACTCCATCATCGGCAGGGCTGTTGTTGTTCATGCCGATCCTGATGACCTTGGAAAGGGTGGACACGAGCTGAGCA AAAGCACTGGCAATGCAGGAGGAAGAGTTGCCTGCGGTATCATCGGAATGCAAGCTTAA
AA sequence Show only first row Show all	>Lus10004139 pacid=23157515 polypeptide=Lus10004139 locus=Lus10004139.g ID=Lus10004139.BGIv1.0 annot-version=v1.0 MVKAVAVLGNSDGVSGTIFFSQEGDVPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPQGKEHGAPEDEHRHAGDLGNVTVGDDGTATFTIID KHIPLTGANSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGMQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	0	1
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	1.0	0.9488
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	2.8	0.9386
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	3.6	0.9271
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	5.5	0.9263
AT1G11320			unknown protein		Lus10013574 [exp]	5.7	0.9394
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	5.8	0.9435
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	6.2	0.9238
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004236 [exp]	6.7	0.9071
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	7.0	0.9317
AT5G25940			early nodulin-related (.1)		Lus10002236 [exp]	8.4	0.9119

Compare expression of checked genes

Lus10004139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.