Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20160 94 / 7e-23 MEO, ASK17 MEIDOS, ARABIDOPSIS SKP1-LIKE 17, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT2G03190 93 / 2e-22 ASK16 SKP1-like 16 (.1) AT2G03170 91 / 6e-22 ASK14 SKP1-like 14 (.1) AT3G21850 90 / 2e-21 ASK9 SKP1-like 9 (.1) AT1G10230 86 / 9e-20 ASK18 SKP1-like 18 (.1) AT2G03160 84 / 7e-19 ASK19 SKP1-like 19 (.1) AT1G20140 82 / 2e-18 ASK4 SKP1-like 4 (.1) AT3G21860 80 / 6e-18 ASK10 SKP1-like 10 (.1) AT2G25700 80 / 1e-17 ASK3 SKP1-like 3 (.1) AT3G25650 79 / 4e-17 ASK15 SKP1-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031747 [exp] 117 / 4e-31 AT2G03190 104 / 7e-29 SKP1-like 16 (.1) Lus10031171 [exp] 110 / 1e-28 AT2G03170 108 / 3e-30 SKP1-like 14 (.1) Lus10001718 [exp] 101 / 4e-23 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10019432 [exp] 93 / 1e-22 AT1G20140 186 / 2e-61 SKP1-like 4 (.1) Lus10005610 [exp] 85 / 2e-19 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 84 / 3e-19 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019794 [exp] 84 / 7e-19 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017282 [exp] 83 / 7e-19 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10013575 [exp] 81 / 7e-18 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094800 [exp] 105 / 5e-27 AT3G21860 114 / 2e-32 SKP1-like 10 (.1) Potri.009G135800 [exp] 86 / 7e-20 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 79 / 2e-17 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.012G085200 [exp] 79 / 2e-17 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.016G028300 [exp] 77 / 1e-16 AT2G03170 79 / 6e-19 SKP1-like 14 (.1) Potri.002G018700 [exp] 75 / 6e-16 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 74 / 1e-15 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.005G109900 [exp] 74 / 2e-15 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.012G086900 [exp] 57 / 2e-09 AT4G34210 130 / 1e-39 SKP1-like 11 (.1) Potri.001G132300 [exp] 48 / 1e-06 AT1G75950 122 / 3e-36 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10004140 pacid=23157540 polypeptide=Lus10004140 locus=Lus10004140.g ID=Lus10004140.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAAATCAACACCACGGAGAAGAAGATCGATTCCAAAATCAAAACCGGCCTGGCGAGCACGCCTCTGAAGAATCCTCTGAGGACAATCGAAT CAGTCCCCGAAAAGAAGGTGACTCTGAAGTCGTCGGACGAGGAGCTCTTTGAGATCGACGAGTCGGTCGCGAGGGAGATGGTGATGGTGAAGAACTTCCT CGACGCCCGGGACGAGAACGACCCTTCTTTCTCCTGCTCTTCTCACGAGCCGATCCCGCTGTTCCACAACGTTGCGGGGAGTGATCTGGCGGTGATCATA GAGTACTTGAACAAGAGGAGGGATATCTTGGCGAAGGAGAGCAAAGCGAAGGCGAGGGCCGCGGTGAGGGCGATGGGGAACAAGCTGGCCAACAAGCTCT CTCTCAGGGAGGAGATCAAGTCGGTGCTGCTGGCGGCCAACTATTTGGACGTGAAGGAGTTTCAGGACGTGCTGAGCCAGAACATCGCCGAGCGGCTCCC GAGTAGGACCGTGGAGTTTGTGAGGGAGTTCTTCGGGATCGAGAACGATTTCGAGCCGGGGGAGGAAGAGAAGATCAGGGAGGAGAACAAGTGGGCTTTC AAGAATGTCAAGCCATTTTGGGGATGGCAGAGTCTACTTCATGGACGGAATCTACTACGTCAAGGGCTCCGATGCCAAGTTTGCCTGCTCTCTCTGAATC TTGGCTTCCTGACCCTGACCCCCGGCCATCCAACGGCACACATGGCACTCCCAAATGAGCTGGCCAACAAGCTTCATCATATAGAAGAGATCCCGTCGGT GCCGAGGGCGACCAGATATGTGGAGCTGCAGGAGTTTTATGATATGCTGATCCAGAACATCGCCGATCAGATATCGAGGTGGATGGCGGAGTCCACTAGG GAGTTTTTCTCGATCGACGATTGGCAGGCTTTGGAAAATGTTGAGTATTGTGAAGATGATTTCGAGCCCGGGGAGGAGGAGACGATCCGGGATGAAGATG ATTTCGACATGTGGGAGGAGGAGTCCTCGAGGAGGACCGCGGAATTCGTGAGGGGGTTTCTCGGGGAGCCGTGGGAGGAGGAGAAGACCCCGGAGGAGAA TAGGTGGGCAATGATGATTGATTGA
AA sequence Show only first row Show all	>Lus10004140 pacid=23157540 polypeptide=Lus10004140 locus=Lus10004140.g ID=Lus10004140.BGIv1.0 annot-version=v1.0 MASEINTTEKKIDSKIKTGLASTPLKNPLRTIESVPEKKVTLKSSDEELFEIDESVAREMVMVKNFLDARDENDPSFSCSSHEPIPLFHNVAGSDLAVII EYLNKRRDILAKESKAKARAAVRAMGNKLANKLSLREEIKSVLLAANYLDVKEFQDVLSQNIAERLPSRTVEFVREFFGIENDFEPGEEEKIREENKWAF KNVKPFWGWQSLLHGRNLLRQGLRCQVCLLSLNLGFLTLTPGHPTAHMALPNELANKLHHIEEIPSVPRATRYVELQEFYDMLIQNIADQISRWMAESTR EFFSIDDWQALENVEYCEDDFEPGEEETIRDEDDFDMWEEESSRRTAEFVRGFLGEPWEEEKTPEENRWAMMID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	6.2	0.8235
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	9.9	0.8099
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	15.3	0.7959
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	19.6	0.8080
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	19.9	0.7663
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	24.3	0.7856
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	24.9	0.8096
AT5G52390			PAR1 protein (.1)		Lus10033988 [exp]	32.1	0.6695
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	33.0	0.7897
AT1G57540			unknown protein		Lus10029982 [exp]	33.5	0.6904

Compare expression of checked genes

Lus10004140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.