Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 781 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 740 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 688 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 579 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 171 / 2e-46 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 156 / 3e-41 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT2G01980 57 / 2e-08 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 52 / 1e-06 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033840 [exp] 922 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 908 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 812 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 717 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 684 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 683 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 581 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 440 / 3e-151 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10038727 [exp] 145 / 4e-37 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045100 [exp] 831 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 822 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 775 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 692 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 594 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 153 / 3e-40 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10004141 pacid=23157534 polypeptide=Lus10004141 locus=Lus10004141.g ID=Lus10004141.BGIv1.0 annot-version=v1.0 ATGGAAGCTTTGAGCTCAGTTACGACGAGGCTGCAGGGGCTATCAACATCAGATCATGCCTCAGTGGTATCAATGAACTTGTTTGTAGCACTTCTATGTG CTTGTATCGTCATTGGACATCTTCTGGAGGAGAATCGGTGGATGAATGAGTCTATTACTGCGCTTATGATCGGTGTTTGCACTGGAGTTGTGATTTTGCT GATTAGTGGAGGGAAAAGCTCTCATCTACTGGTCTTTAGCGAGGATCTTTTCTTTATATATCTTCTGCCGCCGATCATATTCAATGCTGGGTTCCAGGTG AAGAAGAAGCAGTTCTTCAGGAATTTCATCACGATTATGCTGTTCGGTGCTGTCGGTACATTGATATCTTGTTGCGTTATATCGTTAGGTGCCATTCAGA TCTTCAGTAGAATGGACATTGGTCTTGGCATTGGAGACTATATAGCACTCGGAGCGATATTTGCAGCGACAGATTCCGTATGCACGTTGCAGATTCTTAA TCAGGACCAAACACCTCTACTTTACAGTCTTGTGTTCGGGGAAGGTGTCGTAAACGATGCTACATCAGTAGTGCTGTTTAATGCACTTCAGGGCCTCGAT GTTGTCAATCTGACTCCACATATTGGCTTGGAGTTTCTTGGAAACTTCTTCTATCTGTTCATCACCAGTACCTTACTAGGCGCTGCGACCGGATTAGTCA GTGCTTACATTATCAAGACACTCTACTTTGGCAGGCATTCAACAGATAGGGAGGTTGCTCTCATGATACTGATGGCATACCTTTCATATATGCTCGCTGA GCTATTCTATTTGAGTGGAATTCTCACAGTGTTCTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTGACCGAGAGTTCTCGAGTAACAACG AAGCATGCTTTCGCAACGTTATCTTTTGTTTCTGAGATATTCATCTTCCTCTACGTCGGTATGGATGCCTTGGACATCGAGAAATGGAGCGTCGTGAGTG ACAGCCCTGGAACATCAGTTGCTGTGAGTTCAATACTATTAGCACTTGTTCTGGTTGGAAGAGCAGCTTTCGTCTTCCCCCTCTCGTTCTTATCGAACTT ATCAAAGAAAAATCCTAACGATAAGATCAGCATCAAGCAGCAAATTGTCATATGGTGGGCTGGATTAATGAGAGGTGCTGTATCCATGGCACTTGCATAT AACAAGTTTACCAGTGGAGGACACACTCATTTGCGAGGGAACGCGATACTGATCACCAGCACCATAATCGTCGTTCTGTTCAGCACTGTGGTGTTTGGTC TGATGACTCAACCTCTCATAAGATTCCTCCTACCTACCGGCAAAGGCGGCCATTCAGCAGAACCTTCTCTCACCAGCTCCCCAAAATCGATCGTAGTCCC ACTCCTCGGCGAGGGGCAGGACTCGCTAGAGGACCTTGCTCATCAAGTCAACAGCGGGAACAGGCTTCGAGCCTTGCTGACCACACCGACACACACCGTA CATTACTACTGGCGGAAGTTCGACAACGCATTCATGAGGCCGGTCTTCGGTGGCCGCGGGTTCGTCCCTTTTGTCCCTGGCTCGCCGACCGAGAGGAGTC TTCCTAGCATCAACACTCCATTTCAGTGA
AA sequence Show only first row Show all	>Lus10004141 pacid=23157534 polypeptide=Lus10004141 locus=Lus10004141.g ID=Lus10004141.BGIv1.0 annot-version=v1.0 MEALSSVTTRLQGLSTSDHASVVSMNLFVALLCACIVIGHLLEENRWMNESITALMIGVCTGVVILLISGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQV KKKQFFRNFITIMLFGAVGTLISCCVISLGAIQIFSRMDIGLGIGDYIALGAIFAATDSVCTLQILNQDQTPLLYSLVFGEGVVNDATSVVLFNALQGLD VVNLTPHIGLEFLGNFFYLFITSTLLGAATGLVSAYIIKTLYFGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTT KHAFATLSFVSEIFIFLYVGMDALDIEKWSVVSDSPGTSVAVSSILLALVLVGRAAFVFPLSFLSNLSKKNPNDKISIKQQIVIWWAGLMRGAVSMALAY NKFTSGGHTHLRGNAILITSTIIVVLFSTVVFGLMTQPLIRFLLPTGKGGHSAEPSLTSSPKSIVVPLLGEGQDSLEDLAHQVNSGNRLRALLTTPTHTV HYYWRKFDNAFMRPVFGGRGFVPFVPGSPTERSLPSINTPFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10004141 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	10.8	0.7838
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10009728 [exp]	11.0	0.7692
					Lus10031697 [exp]	15.6	0.7598
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10000228 [exp]	22.7	0.7561
AT5G14230			unknown protein		Lus10015811 [exp]	26.3	0.7148
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	27.5	0.7070
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	27.9	0.7700
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	28.8	0.7666
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	29.5	0.7721
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	40.2	0.7333

Compare expression of checked genes

Lus10004141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.