Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27120 727 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 720 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 490 / 1e-170 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 352 / 1e-115 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 339 / 6e-111 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 102 / 7e-23 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001716 [exp] 932 / 0 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 857 / 0 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 853 / 0 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10007265 [exp] 383 / 8e-130 AT3G05060 310 / 1e-101 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10017214 [exp] 342 / 1e-111 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 342 / 2e-111 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10029168 [exp] 114 / 1e-26 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 113 / 2e-26 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10040032 [exp] 102 / 1e-23 AT1G56110 231 / 1e-71 homolog of nucleolar protein NOP56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032300 [exp] 793 / 0 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.005G045600 [exp] 792 / 0 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 341 / 6e-111 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 341 / 1e-110 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.014G102800 [exp] 116 / 9e-28 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 113 / 1e-26 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08156 [flax] [poplar] NOP5NT NOP5NT (NUC127) domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10004143 pacid=23157532 polypeptide=Lus10004143 locus=Lus10004143.g ID=Lus10004143.BGIv1.0 annot-version=v1.0 ATGAATGTGTTGTTCGAGTCTCCCGGAGGCGTCGCCCTTTTCAAAGTTTTGGATGAAGGGAAGCTATCCAAAGTTGAGGACTTATGGAAGGAGTTCTCTA GCGGAGATGCAGCTCGAAAGGTGGTGAAGCTGAAAGCCTTCTACAAGTTCGAGAACACAAGCACGGCATTGGAGGAAGCTACCAAGATCATTGATGGCTC AACGACTAAAGGTCTACGCAAGTTCTTGAAAGCAAACTGTTCCAACGAGCAATTGGCCGTGGCTGACTCAAAGCTGGGAAATGAAATCAAAGAAAAATTG AAAATCAACTGTGTGCACAACAATGCCGTCATGGAATTGATGAGAGGCGTGAGGAGTCAGTTGACTGAGCTGATTACCGGTCTCGAGAATCAAGATTTGC CCCGGATGAGCTTGGGTCTCGCTCATAGTTTGTCTAGATACAAACTTAAGTTCAGCCCCGATAAGGTTGATACTATGATCATTCAAGCAATCGGTTTACT TGACGATCTTGATAAGGAGCTTAACACCTATGCAATGAGAGTCAGGGAGTGGTACGGATGGCATTTTCCCGAGCTGGCTAAGATCGTACAAGACAATATT GCATATGCTAAAGTTGTGAAATTGATGGGGTTCCGTGAGAACGCTGCAAAATTCGATTTCTCGGAGGTATTAACTGAAGAAATCGAGACAGAAGTGAAGG AAGCAGCGATGATATCCATGGGTACCGAAATCAGCGAGCATGACTTGACAAACATTCGCCAACTCTGCGACCAGGTCTTGTCTCTTTCAGAATACAGGGC GCAGCTTTACGATTACCTCAAGAGCAGGATGAACACGATTGCACCGAATTTGACTGTTCTCGTCGGTGAACTTGTTGGTGCTCGACTAATCGCCCATGGC GGTAGCTTGATGAATCTAGCCAAGCAGCCCGGGAGCACGGTTCAGATTCTCGGTGCGGAGAAGGCCCTGTTCCGAGCTTTGAAGACTAAGCACGCTACAC CGAAATACGGGTTGATATACCATGCTTCCCTTGTCGGCCAAGCACCGCTGAAAATGAAAGGGAAGATTTCTAGGTCGTTGGCTGCGAAGGCTTCGCTGGC GATTCGATATGATGCGCTTGGAGATGGCCAGGATAACTCTATGGGACTCGAGAATCGTGTTAAGCTCGAAGCTCGATTGAGGAGCCTTGAAGGCAAGGAA TTGGGACGATCGGCTGGCTCGGTTAAAGGAAAGCCGATGATTGAAGCTTATGACAAGGATAGGAAGAAGGGAGCTGGTGGACTCATAACTCCTGCAAAGA CTTACAATCCTTCTGCTGATGCTGTGCTTGGCCTGACTCCGAAATCGAACGAGGAGGAAACCGTGGAGAAGAAGAGGAAGACTGATGACGACCCAGCTGA GGAGGCTCCGGCTACTGAAGAGAAGAAAGACAAAAGGAAGAAGAAGAAGAGCAAAGATGTGGAAAAAGCTGAAGAAGAAGATGGTGCAGCAGAGAAGGAG AAGAAGAAGAAAAAGAAGGAAGAAGAAGCTGTTGAAGATGGAGAGAAGAAGAAGAGGAAACGATCCGAACCAGAGGAAGAATCAGAGACACCTAGCAGGA AGAAGGATAAGAAGAAAAAGAAGAAGGGTTCAGATTGA
AA sequence Show only first row Show all	>Lus10004143 pacid=23157532 polypeptide=Lus10004143 locus=Lus10004143.g ID=Lus10004143.BGIv1.0 annot-version=v1.0 MNVLFESPGGVALFKVLDEGKLSKVEDLWKEFSSGDAARKVVKLKAFYKFENTSTALEEATKIIDGSTTKGLRKFLKANCSNEQLAVADSKLGNEIKEKL KINCVHNNAVMELMRGVRSQLTELITGLENQDLPRMSLGLAHSLSRYKLKFSPDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIVQDNI AYAKVVKLMGFRENAAKFDFSEVLTEEIETEVKEAAMISMGTEISEHDLTNIRQLCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTVLVGELVGARLIAHG GSLMNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAPLKMKGKISRSLAAKASLAIRYDALGDGQDNSMGLENRVKLEARLRSLEGKE LGRSAGSVKGKPMIEAYDKDRKKGAGGLITPAKTYNPSADAVLGLTPKSNEEETVEKKRKTDDDPAEEAPATEEKKDKRKKKKSKDVEKAEEEDGAAEKE KKKKKKEEEAVEDGEKKKRKRSEPEEESETPSRKKDKKKKKKGSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	0	1
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	1.0	0.9758
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	2.2	0.9647
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	2.4	0.9719
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	2.8	0.9670
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	3.5	0.9682
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	4.7	0.9497
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	5.3	0.9608
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	5.7	0.9591
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	6.0	0.9591
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	6.0	0.9625

Compare expression of checked genes

Lus10004143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.