Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 755 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 674 / 0 Protein kinase superfamily protein (.1) AT5G50860 621 / 0 Protein kinase superfamily protein (.1) AT1G53050 606 / 0 Protein kinase superfamily protein (.1) AT1G09600 543 / 0 Protein kinase superfamily protein (.1) AT1G74330 538 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 516 / 3e-178 Protein kinase superfamily protein (.1.2) AT1G03740 524 / 8e-178 Protein kinase superfamily protein (.1.2) AT1G18670 524 / 1e-177 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT5G44290 513 / 2e-174 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001715 [exp] 1041 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 808 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 794 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 599 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 598 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 551 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 548 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10033684 [exp] 546 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10021642 [exp] 541 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045500 [exp] 864 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 852 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 804 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 674 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 674 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 614 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 613 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 589 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 560 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 550 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004144 pacid=23157506 polypeptide=Lus10004144 locus=Lus10004144.g ID=Lus10004144.BGIv1.0 annot-version=v1.0 ATGGGGTGTGTTTTTGGTAGAGAGGTTTCATCTGGTGTAGTCTCAGAATCCAAAGATGCAGCAGCAGCTGCTGTTGTTAGTAGGAATAGGAACCTAAGTG CTCAATCCAGCAGGAGCTTGGAAGAGGATGACAATGTCTCGGTGACCAAGACCGAAACGAATCTGGAGACGAGTCAGAATGAGGAGAGCCAGAAAGAGGA TAATAATGAAGTTGGTGTTGTGGATAGTAAGAAGCCTAGAGGTGATAGGAGGAGAAAGTCGAGGCCGAATCCTCGGTTGAGTAACCCTCCAAAGCATGTG CACGGCGAGCAGGTGGCTGCTGGCTGGCCGCCTTGGCTATCCGCTGTCTGTGGTGAGGCGCTTAATGGTTGGATTCCACGGCGTGCTGACACGTTCGAAA AGATTGATAAGATTGGGTCGGGGACATATAGCAATGTGTACAAGGCAAGAGATCTCTTGACTGGGAAAGTCGTTGCACTAAAGAAGGTCCGCTTCGATAA CTTGGAGCCGGAGAGTGTGAAATTCATGGCTCGAGAGATTCTCATTCTTCGGAGGCTGGACCATACGAACGTCGTGAAATTGGAAGGTTTGGTTACTTCA AGGATGTCATGTAGTCTGTACCTAGTCTTTGAATACATGGAGCACGATCTAGCTGGACTCGCTGCAAGTCCAGATGTCACATTCACCGAAACGCAGGTTA AATGTTACATCCAGCAGCTATTATCCGGGCTCGAGCATTGTCACAAACGTGGGGTGCTTCACCGCGACATTAAGGGATCCAATCTTTTGATCGACAACGA AGGAGTGCTTCGGATTGCTGATTTTGGATTGGCAAGCTTTTTCGATCCTAACCGTAGACATCCAATGACGAGTAGAGTTGTCACGTTATGGTACCGGCCT CCTGAGCTCCTACTTGGCGCTACAGAATATGGCGTCGGTGTAGACCTTTGGAGTGCCGGCTGTATATTAGCCGAGCTATTGGCTGGGAAACCCATTATGC CTGGTCGTACGGAGGTAGAGCAGCTGCACAAGATCTACAAGTTGTGTGGTTCGCCTTCGGATGACTACTGGAAGAAGTCGAAGTTGCCGAATGCAACATT ATTTAAGCCTCGCGAGCCGTACAAAAGATGCATAAGAGAGACGTTTAAAGATTTCCCGCGGTCTTCTCTCCCTCTCATCGAGACGCTCCTCGCAATGGAT CCGGGAGAACGACAGACAGCAACCGCTGCATTAAGAAACGAATTCTTTACGACCGAACCTTATGCTTGTGATCCTTCCAGCCTCCCGAAGTATCCGCCAA GTAAAGAGATCGATGCCAAACGACGAGATGATGAAGCTCGGAGGCAACGAGCTGCTGCGAAAGCTCAAAATGAATCCACGAGGAAGCCACGAATTCGTGA CCGGACAGCTAGGGGAACGGCTGCTCCGGAAGCCAATGCAGAGCTACAATCCAATATTGATAGGAGGCGCCTTGTGACTCACGCAAACGCGAAGAGCAAG AGCGAGAAGTTCCCTCCGCCACACCAGGACGGAGCTGTGGGTTACCCGTTGGGAGCTTCCCATCACATCGACCCTTCGGTTGTTCCTTCTGATGTGCCGT TCAGCACCACATCATTCACCTACTCAAAAGAGCCGATCCAGACGTGGTCAGGCCCATTGGGAGGCGAACCGGCCGGCGGTCACAGGCGAAAGAAGCATGG GGATGGCCGAGAGCAACGAGCTGCTGCGAAAGCTCAAAATGAATCCACGAGGAAGCCACGAATTCGTGACCGGACAGCTAGGGGAACGGCTGCTCCGGAA GCCAATGCAGAGCTACAATCCAATATTGATAGGAGGCGCCTTGTGACTCACGCAAACGCGAAGAGCAAGAGCGAGAAGTTCCCTCCGCCACACCAGGACG GAGCTGTGGGTTACCCGTTGGGAGCTTCCCATCACATCGACCCTTCGGTTGTTCCTTCTGATGTGCCGTTCAGCACCACATCATTCACCTACTCAAAAGA GCCGATCCAGACGTGGTCAGGCCCATTGGGAGGCGAACCGGCCGGCGGGCACAGGCGAAAGAAGCATGGGGATGGCCGAGAGTCTTCGAAGGTCGGAACT AGTCACCGCAAGAGACATTGA
AA sequence Show only first row Show all	>Lus10004144 pacid=23157506 polypeptide=Lus10004144 locus=Lus10004144.g ID=Lus10004144.BGIv1.0 annot-version=v1.0 MGCVFGREVSSGVVSESKDAAAAAVVSRNRNLSAQSSRSLEEDDNVSVTKTETNLETSQNEESQKEDNNEVGVVDSKKPRGDRRRKSRPNPRLSNPPKHV HGEQVAAGWPPWLSAVCGEALNGWIPRRADTFEKIDKIGSGTYSNVYKARDLLTGKVVALKKVRFDNLEPESVKFMAREILILRRLDHTNVVKLEGLVTS RMSCSLYLVFEYMEHDLAGLAASPDVTFTETQVKCYIQQLLSGLEHCHKRGVLHRDIKGSNLLIDNEGVLRIADFGLASFFDPNRRHPMTSRVVTLWYRP PELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSDDYWKKSKLPNATLFKPREPYKRCIRETFKDFPRSSLPLIETLLAMD PGERQTATAALRNEFFTTEPYACDPSSLPKYPPSKEIDAKRRDDEARRQRAAAKAQNESTRKPRIRDRTARGTAAPEANAELQSNIDRRRLVTHANAKSK SEKFPPPHQDGAVGYPLGASHHIDPSVVPSDVPFSTTSFTYSKEPIQTWSGPLGGEPAGGHRRKKHGDGREQRAAAKAQNESTRKPRIRDRTARGTAAPE ANAELQSNIDRRRLVTHANAKSKSEKFPPPHQDGAVGYPLGASHHIDPSVVPSDVPFSTTSFTYSKEPIQTWSGPLGGEPAGGHRRKKHGDGRESSKVGT SHRKRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	0	1
AT3G48860			unknown protein		Lus10036015 [exp]	2.2	0.9351
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	2.8	0.9013
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	3.3	0.8795
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	6.2	0.9129
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	6.3	0.8809
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	7.5	0.9121
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	9.2	0.8961
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	10.0	0.8998
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	10.0	0.8695
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	12.2	0.8573

Compare expression of checked genes

Lus10004144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.