Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05040 1412 / 0 HST1, HST HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001714 [exp] 2208 / 0 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10033845 [exp] 1785 / 0 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10018994 [exp] 1781 / 0 AT3G05040 1579 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032100 [exp] 1639 / 0 AT3G05040 1513 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10004145 pacid=23157508 polypeptide=Lus10004145 locus=Lus10004145.g ID=Lus10004145.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCAAACAATGTAGCTAGAGCAATCGTTGCAGCTCTGGACTGGAACTCATCTCCCGATGCTCGCAAGGCAGCTGTTTCTTACCTTGATTCTG TTAAAGCCGGAGATGTACGTGCACTAGCAAACACATCGCTGCTCCTTGTTAAGACAGATTGGCCTTCCGAGATCCGGTTGCATGCTTTCAAGATGTTGCA GCATTTAGTACGGTTGCGGTGGGAGGAGCTCGGTTCAATGGAGCGGAGGAACTTTGGGAATGTAGCTGTTGAATTGATGTCTGAGACGACAAATGCTACT GAAGAATGGCCATTGAAGAGTCAAAAGTCTGCTCTAGTTGCTGAGATTGTTAGAAGAGAAGGATCTGAACTGTGGCAAGAGCTTCTGCCTTCTTTGGTTT CCTTATCCAACCGAGGTCCGGTGCAGGCCGAATTGGTTTCAATGACGTTGAGGTGGCTTCCCGAAGACATTACAGTTCACAATGAAGATTTGGAAGGTGA TCGCCGCCGCCTATTACTAAGGGGGCTTACGTTGTCTTTACCAGAAATTCTGCCATTGCTCTACACGCTGCTGGAAAGACACTTTGGAGCTGCATTGAAT GAAGTGAGTAGGCAGCAACTTGATGTCGCGAAACAGCACGCTGCAACTGTAACGGCTACGTTGAATGCTATCAATGCGTATGCTGAATGGGCTCCGGTGG TGGATCTAGCAAAATATGGCATAATTCATGGGTGTGGCATTTTGCTTTCAGCTGTCGATTTCCGTCTTCATGCTTGTGAATTCTTCAAACTTGTCTCTTC AAGGAAGAGACCGATCGATGATTCTGCTTCAGAATTCGATTCTACAATAACTAGCATCTTTCAGATTTTGATGAATGTATCTAGAGAATTTTTGCAGAAG TCCGGTTCTCTAGATGAGAACGAAATCGAGTTTGCTGAATATATATGTGAAAGTATGGTTTGTTTGGGATCTACTAATTTGCACTGCATTACTGGAAACA GTTCTATACTATCTATATACTTACAACAGATGCTGGCCTTTTTCCAACACTATAAACTATGCCTGCATTACCAATCCCTTCTCTTTTGGCTGGCGTTAAT GAGGGATTTAGCATCAAAGCCAAAAGTTACAGCAGCTGATGGATCTGGTTCTGGTTCTGGTTCTGCTCAGCTTGACAATCACAAGCAAATGGTTTTGAAT CTCCTGAACGACGATATGTGTGGTTCGATACTAGATATCTCGTTCCAGCGCATGCTTAGACAGGAGAAAGCATTTCCCGGTGCTTCAAACCTGGAGTTAT GGAGTGATGATTTCGGAGGTGACTTTGGCCAGTACCGATCGAAGCTGTCTGATCTGATGAAGCTTGTTGCTACTTTCAAGCCCATGATAGCTAGTAGCAA AGTGTGTGACAGAATGTATTCAATTGCTAACAGCCCCTTGACTTCCCCGGTGCCTGTTCAGGATCTAGCTATGATAGAGAGTGTTCAAGCTTCTCTAGAG ATTGTAGTAAGTGCAGTATTCGATGGATCAAATGAGTCAAGCTCTGAACTTCATCTTGTTGTATGCAGAATATTTGAAGGTTTGCTTCAGCGACTTATTG CTCTGAAATGGACAGAACCAGCTCTCGCCGAAATCCTAGGACACTGTTTGGATGCATTGGGTCCTTTTCTGAAGTACTATCCTGATGCTGTTGGCGGGGT CATCAACAAACTATTTGAACTTCTGTCCTCGCTTCCTTTTGTTGTGAAGGATCCCTCAACAAGTCGTGCCCGACATGCAAGGTTACAGATTTGTGCGTCG TTCATACGAATAGCAAAGGCTGCTGATAAAAGCATTTTGCCCCACATGAAGGGTATAGCAGATACCATGGGTTATATGCAAAATGAGGGTTGTTTGCTTC GCAGCGAGCACAATATTCTTGGCGAAGCGTTCATTGTCATGGCTTCCTCCGCTGGGCTTCAACAGCAACAGGAGGTTTTAAAGTGGTTGCTCGAACCTTT GAGCCAGCAGTGGATACAGTTGGAATGGCAGAACAAATACTTGTCCGTACCATCTGGCGTGGTTCGGTTATGCTTAGACAACACACAATTAATGTGGTCA GTTTTCCACACAGTCATGTTCCTCGAGAAGGCGCTTAAAAGGACTGGATACAGAAAGGGCGGCTCTACTACAGATCCTCCCATGCAGCATCCATTGAGTT CTCATCTAGCTTGGATGCTTCCCACTCTCTTAAAAATGCTCCGTGCTGTACATGCTCTTTGGTCGCCTTCTATATCTCAGACGTTACCAGCAGAGGTGAA AGCTGCCATGATTATAACTGATGCTGAGAAGTATAGCCTTCTTGGAGGAGCAAACCCGAAAATACCAAAGGAGGGTGAGACAAATGAGGCTGATATAAGA AACTGGTTAAAAGGAATCAGGGACAGCGGTTACAACGTATTAGGTCTGGCTGCAACCGTTGGAGAACCATTCTTCAAATGCTTAGATGTGGATGCATTTC CCTTAGCACTAATGGAGAACATACAATCAATGGACTTCCGACATTTAAAACAGCTTATTCATTCAATTTTGATCCCTTTGGTGAAATCCTGCCCTCGGGA AGCGTGGGAGACTTGGCTCGAGAAGCTTTTGCAGCCGCTTTTTGTCCATTTGCAACGAGTTCTTAGCTTCTCTTGGTCAGGTCTGTTGCATGAAGGTAGA GCTAAGGTTCCAGACATACAAGGAATCGTTTCCGGACCGGACATGAAAGTCGAAGTTATGGAGGAGAAACTGCTCCGAGATTTAACTCGCGAAACGTGCA CACTTCTTTCGGTTATCTCGTCGTCAGGGCTTAACGCTGGAATCCCGAGCTTAGAACCGTTTGGCAATGCTACTAATCGTGTTGATACAAGCTCTCTAAC GGATTTGGATGTCTTTCTCCCCAAGTCTATGGTTGCGTTCATTTTGCAGCGGAATAGCCTGGCAATTCCGGCTCTGCAGATTTGTTTAGAGGCCTTCAAT TGGACGGATGGCGAATCGATGACTAAAGTTTCGTCCTTTTGTTCTGCTGTGGTTGTTCTAGCGATCTCAACAAGAAATGTCGAGCTCAGGCAGTTTGTCT GTAAAGATCTATTCTCGGCTGCAATCAAAGGCTTGGCACTCGAGTCGAATGCGATCATCAGTGCAGACTTGGTCGGTCTTTGTCGCGACATTTTTGTGTA TCTTTGGGACAGAGATCCTGCTCCTAGACAGATTCTGTTGTCTCTTCCTTGCATTTCGCAACACGATTTGTCTGCATTCGAGGAAGCATTGACAAAGACA TCTAGTCCAAAGGAACAAAAGCAGCATATGAAGAGCTTGCTTATGTTAGCTACTGGAAACAAGTTGAAGGCACTAATGGCTTCTACCCAGAAAAGTGTAA ATGTCATCACAGACGTTACAGCGAGGTCTCGCACCTTGAATGCTGCTGCTCGAGAAGCAAGAATCGAGGACGATGGGGAACCGGTTGGACTTGCAGCTAT ATTGTGA
AA sequence Show only first row Show all	>Lus10004145 pacid=23157508 polypeptide=Lus10004145 locus=Lus10004145.g ID=Lus10004145.BGIv1.0 annot-version=v1.0 MEEANNVARAIVAALDWNSSPDARKAAVSYLDSVKAGDVRALANTSLLLVKTDWPSEIRLHAFKMLQHLVRLRWEELGSMERRNFGNVAVELMSETTNAT EEWPLKSQKSALVAEIVRREGSELWQELLPSLVSLSNRGPVQAELVSMTLRWLPEDITVHNEDLEGDRRRLLLRGLTLSLPEILPLLYTLLERHFGAALN EVSRQQLDVAKQHAATVTATLNAINAYAEWAPVVDLAKYGIIHGCGILLSAVDFRLHACEFFKLVSSRKRPIDDSASEFDSTITSIFQILMNVSREFLQK SGSLDENEIEFAEYICESMVCLGSTNLHCITGNSSILSIYLQQMLAFFQHYKLCLHYQSLLFWLALMRDLASKPKVTAADGSGSGSGSAQLDNHKQMVLN LLNDDMCGSILDISFQRMLRQEKAFPGASNLELWSDDFGGDFGQYRSKLSDLMKLVATFKPMIASSKVCDRMYSIANSPLTSPVPVQDLAMIESVQASLE IVVSAVFDGSNESSSELHLVVCRIFEGLLQRLIALKWTEPALAEILGHCLDALGPFLKYYPDAVGGVINKLFELLSSLPFVVKDPSTSRARHARLQICAS FIRIAKAADKSILPHMKGIADTMGYMQNEGCLLRSEHNILGEAFIVMASSAGLQQQQEVLKWLLEPLSQQWIQLEWQNKYLSVPSGVVRLCLDNTQLMWS VFHTVMFLEKALKRTGYRKGGSTTDPPMQHPLSSHLAWMLPTLLKMLRAVHALWSPSISQTLPAEVKAAMIITDAEKYSLLGGANPKIPKEGETNEADIR NWLKGIRDSGYNVLGLAATVGEPFFKCLDVDAFPLALMENIQSMDFRHLKQLIHSILIPLVKSCPREAWETWLEKLLQPLFVHLQRVLSFSWSGLLHEGR AKVPDIQGIVSGPDMKVEVMEEKLLRDLTRETCTLLSVISSSGLNAGIPSLEPFGNATNRVDTSSLTDLDVFLPKSMVAFILQRNSLAIPALQICLEAFN WTDGESMTKVSSFCSAVVVLAISTRNVELRQFVCKDLFSAAIKGLALESNAIISADLVGLCRDIFVYLWDRDPAPRQILLSLPCISQHDLSAFEEALTKT SSPKEQKQHMKSLLMLATGNKLKALMASTQKSVNVITDVTARSRTLNAAAREARIEDDGEPVGLAAIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	1.7	0.9404
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	3.2	0.9131
AT1G27595			unknown protein		Lus10028229 [exp]	4.0	0.9301
AT1G27595			unknown protein		Lus10007230 [exp]	5.5	0.9291
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	5.7	0.8981
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	7.3	0.8987
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	12.0	0.9146
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	12.5	0.8771
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	12.8	0.8920
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	14.4	0.8967

Compare expression of checked genes

Lus10004145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.