Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11680 829 / 0 EMB1738, CYP51A2, CYP51G1 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) AT3G61040 117 / 3e-28 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT5G45340 112 / 1e-26 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 111 / 3e-26 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G32440 108 / 4e-25 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT4G19230 105 / 2e-24 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G14620 99 / 4e-22 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT1G78490 98 / 1e-21 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT2G34490 96 / 4e-21 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 (.1) AT2G28860 96 / 5e-21 CYP710A4 cytochrome P450, family 710, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001713 [exp] 969 / 0 AT1G11680 852 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Lus10021725 [exp] 119 / 6e-29 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10008423 [exp] 115 / 2e-27 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10042652 [exp] 114 / 4e-27 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 107 / 1e-24 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 104 / 8e-24 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10024577 [exp] 102 / 4e-23 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 102 / 5e-23 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10008935 [exp] 101 / 1e-22 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068400 [exp] 835 / 0 AT1G11680 864 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Potri.003G161700 [exp] 832 / 0 AT1G11680 828 / 0.0 embryo defective 1738, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1 (.1) Potri.014G029100 [exp] 123 / 2e-30 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 120 / 3e-29 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 117 / 2e-28 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 117 / 3e-28 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.018G134000 [exp] 113 / 8e-27 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.012G115000 [exp] 106 / 1e-24 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G133901 [exp] 106 / 2e-24 AT5G36110 526 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 105 / 3e-24 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004146 pacid=23157530 polypeptide=Lus10004146 locus=Lus10004146.g ID=Lus10004146.BGIv1.0 annot-version=v1.0 ATGGATTTCGATCAGTTGAAGCTAATGAACGTGGGGCTCGTGATAGTGGCGACATTGGTGGTGGCGAGGCTGATTTCGTCACTCCTAATGAGCAGCAGAT CCAAACGCTTACCTCCAAAGGTTAAGCAAGGAATCCCAGTGGTGGGCGGATTGTTGAAGTTTCTGAAAGGTCCGATCTTGATGCTGAGGGAAGAGTATCC TAAACTAGGAGGCGTCTTCACATTGAATCTGGTGAATAGGAATATCACCTTCCTCATTGGTCCTGAGGTTTCTGCTCATTTCTTCAAGGCTCAGGAGGCT GATCTCAGCCAGCAGGAGGTTTACCAGTTCAATGTCCCGACTTTCGGCCCTGGAGTGGTGTTTGATGTTGATTACTCGGTCCGACAAGAGCAGTTCCGGT TCTTTACTGAGTCTCTTCGTGTTAACAAGCTCAAGGGATATGTAGATATGATGGTTACAGAAGCTCAGGATTACTTCTCCAAGTGGGGAGAAAGCGGAGA AGTCGATCTAAAGTACGAACTAGAGCATCTCATCATCCTCACAGCCAGTAGATGCCTACTCGGCCGTGAAGTTCGAGACAAGCTCTTCGACGATGTCTCC TCTCTATTCCACGATCTCGACAATGGAATGCTCCCCATCAGTGTCCTATTCCCTTACCTCCCAATCCCAGCTCACCGTCGTCGTGACCAAGCCCGCAAGA AGCTCGCCAAGATCTTCTCAGACATCATTACCTCCCGCAAGAAAACCGGCTGCTCAGAGAACGACATGCTGCAATCTTTCATCGACTCCAAGTACAAAGA CGGCCGCCCCACTACAGAATCCGAGGTCACCGGCCTCCTCATCGCTGCTCTATTCGCCGGCCAGCACACCAGCTCCATCACCTCCACCTGGACCGGAGCC TACCTCCTCCGTGACCGGAAGTTCCTCGACAGTGTCATAAACGAACAGAAGCAGTTACTTGCAAAGCACGGCAACAAAGTCGACCACGATATCCTCTCCG AAATGGACGTTATGTACCGGTGCATCAAGGAAGCATTAAGGTTGCACCCTCCACTTATCATGCTGCTCCGAAGCTCCCACAGTGACTTCTCCGTCACCAC GAGAGAAGGGAAAGAGTTCGACATCCCAAAGGGACACATTGTCGCGACTTCTCCGGCATTTGCGAACCGGCTGCCGCACATCTACACCGATCCGGACAGG TATGATCCAGACAGGTTTGCTCCAGGGAGGGAAGAAGACAAGGCTGCAGGAGCCTTCTCTTACATATCTTTCGGAGGAGGTAGGCACGGGTGCCTTGGGG AGCCTTTCGCTTATTTGCAGATCAAGGCAATATGGAGCCATTTGCTGAGGAACTTTGAGTTCGAGCTTGTGTCTCCGTTCCCCGAGATTGACTGGAATGC GATGGTGGTTGGTGTGAAAGGGAACGTCATGGTTCGCTACAAACGCCGAGTCCTTGTAGCTGATGATTAG
AA sequence Show only first row Show all	>Lus10004146 pacid=23157530 polypeptide=Lus10004146 locus=Lus10004146.g ID=Lus10004146.BGIv1.0 annot-version=v1.0 MDFDQLKLMNVGLVIVATLVVARLISSLLMSSRSKRLPPKVKQGIPVVGGLLKFLKGPILMLREEYPKLGGVFTLNLVNRNITFLIGPEVSAHFFKAQEA DLSQQEVYQFNVPTFGPGVVFDVDYSVRQEQFRFFTESLRVNKLKGYVDMMVTEAQDYFSKWGESGEVDLKYELEHLIILTASRCLLGREVRDKLFDDVS SLFHDLDNGMLPISVLFPYLPIPAHRRRDQARKKLAKIFSDIITSRKKTGCSENDMLQSFIDSKYKDGRPTTESEVTGLLIAALFAGQHTSSITSTWTGA YLLRDRKFLDSVINEQKQLLAKHGNKVDHDILSEMDVMYRCIKEALRLHPPLIMLLRSSHSDFSVTTREGKEFDIPKGHIVATSPAFANRLPHIYTDPDR YDPDRFAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFELVSPFPEIDWNAMVVGVKGNVMVRYKRRVLVADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	0	1
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	1.0	0.9750
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	2.4	0.9664
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	3.5	0.9666
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	5.5	0.9646
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	5.7	0.9659
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	6.3	0.9653
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	7.5	0.9642
					Lus10023559 [exp]	8.2	0.9526
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	8.5	0.9622
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10041768 [exp]	8.7	0.9505

Compare expression of checked genes

Lus10004146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.