Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 466 / 3e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001712 [exp] 611 / 0 AT3G05100 474 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019000 [exp] 499 / 6e-179 AT3G05100 462 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033850 [exp] 493 / 1e-176 AT3G05100 452 / 8e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034000 [exp] 495 / 1e-177 AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G046300 [exp] 493 / 5e-177 AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004147 pacid=23157542 polypeptide=Lus10004147 locus=Lus10004147.g ID=Lus10004147.BGIv1.0 annot-version=v1.0 ATGACGATAATGGCGAATTTCTTCTCATCTTCATCTTCATCTTCTTCCTCTTCTTCTTCATCACCGCCGCAGAAAGGGATAGTCGTCACAGTTCCGGGCC TCGTCCTCGCCGTCTCCATCGGAGCTCTCACTCTCTTCTTCCTCGCTTCTTCTCTCTCCGCTCCTTGCTCTTGCTTCATCCCTCCGCCGCCGGATGGCGG CGGCGTCGAAGCCCTCACCGTTGGGGAGAAGGTGTCGGCGACGGAGGAGGATATCGAGTGGGTGAGGGATCAGATCCGGGGGAACGGGTTGTATATGCAG GATAATGTTCTACGCAAGGGGATTAATCCGCGGACTAGGGCTCAGCAGCTCCAAGATCTCGTTCAGTACAAGGGCATCTCGCACTATGAACGATCCGATT CGGGTAACCATACAGCCCTCCCTTGCCCTGGGGAGCTCCTGGTGGAAGAGCACCACAGCAACTATGGAGAGCCATGGGCAGGAGGGAGGGACGTGTTCGA ATTCCTAGCAGAGGCCAGTAACCTCTCCCCGAATTCGCAGGTTCTCGAGATAGGCTGCGGGACTTTACGCGTTGGCCTGCATTTCATCCGGTACCTAGTC CCCAAACGGTTCCACTGTCTCGAAAGGGACGAGCTCTCTCTAATGGCTGCTCTTAGATACGAGCTTCCCTCTCAGGGCCTTCTACATAAACGCCCAGTGA TTGTTCGTGGAGAAGACATGGACTTCGCTAGATTCGATCCGGGAGTTTCGTACGACTTGATCTACGCCAGCGCTGTGTTCCTACACATGCCAGATAGACT CGTGTGGACCGGGTTGGAGAGGCTGGCGAACAAGTTGAAGCCTTACACTGGGAGGATATTCGTGTCGCATAATATCAAGTTCTGTTCCAGATTGGGAGGC GAAGAATGCACGAAGAAGTTGAGCGATTTGGGGCTCGAGTATCTCGGGAAGAAGACTCACGACAGTTTGCTGTTTAATCATTACGAGATTTGGTTCGAGT TCAGACGTTTCAAAGCTTAG
AA sequence Show only first row Show all	>Lus10004147 pacid=23157542 polypeptide=Lus10004147 locus=Lus10004147.g ID=Lus10004147.BGIv1.0 annot-version=v1.0 MTIMANFFSSSSSSSSSSSSSPPQKGIVVTVPGLVLAVSIGALTLFFLASSLSAPCSCFIPPPPDGGGVEALTVGEKVSATEEDIEWVRDQIRGNGLYMQ DNVLRKGINPRTRAQQLQDLVQYKGISHYERSDSGNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASNLSPNSQVLEIGCGTLRVGLHFIRYLV PKRFHCLERDELSLMAALRYELPSQGLLHKRPVIVRGEDMDFARFDPGVSYDLIYASAVFLHMPDRLVWTGLERLANKLKPYTGRIFVSHNIKFCSRLGG EECTKKLSDLGLEYLGKKTHDSLLFNHYEIWFEFRRFKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	0	1
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	1.4	0.8770
AT1G54200			unknown protein		Lus10026463 [exp]	6.7	0.8115
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	8.1	0.8048
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	9.1	0.8291
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	9.5	0.7849
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	11.1	0.8150
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	13.4	0.7759
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	14.5	0.8223
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	14.7	0.7964
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	16.9	0.8023

Compare expression of checked genes

Lus10004147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.