Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04970 463 / 1e-162 DHHC-type zinc finger family protein (.1.2) AT2G14255 84 / 4e-17 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G26935 80 / 6e-16 DHHC-type zinc finger family protein (.1) AT5G41060 75 / 1e-14 DHHC-type zinc finger family protein (.1.2) AT5G50020 74 / 3e-14 DHHC-type zinc finger family protein (.1.2) AT4G24630 74 / 5e-14 DHHC-type zinc finger family protein (.1) AT5G20350 72 / 2e-13 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G48760 71 / 3e-13 DHHC-type zinc finger family protein (.1) AT3G56930 71 / 5e-13 DHHC-type zinc finger family protein (.1.2) AT4G00840 68 / 1e-12 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018967 [exp] 449 / 1e-157 AT3G04970 437 / 3e-153 DHHC-type zinc finger family protein (.1.2) Lus10033823 [exp] 198 / 1e-60 AT3G04970 199 / 1e-62 DHHC-type zinc finger family protein (.1.2) Lus10012455 [exp] 80 / 7e-16 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10032009 [exp] 72 / 1e-13 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 72 / 1e-13 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10038108 [exp] 72 / 2e-13 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008037 [exp] 72 / 2e-13 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10033527 [exp] 72 / 2e-13 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 70 / 3e-13 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G041000 [exp] 496 / 7e-176 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.003G160600 [exp] 76 / 9e-15 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 75 / 2e-14 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 75 / 2e-14 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G061800 [exp] 74 / 4e-14 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G325400 [exp] 74 / 4e-14 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.018G121200 [exp] 74 / 5e-14 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.016G025100 [exp] 74 / 5e-14 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 74 / 5e-14 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 74 / 6e-14 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004149 pacid=23157537 polypeptide=Lus10004149 locus=Lus10004149.g ID=Lus10004149.BGIv1.0 annot-version=v1.0 ATGCAGTGGATTTTGCTCTGCCACGGGCTCATAACTCTGCTAGTAGTGATCTCTTTCCTCTGCGGCCAATGGCCAATCTTCCATGGAACTTTCATCCAGC GGTTTCATCACTTCCTCACTTCCGGCTCCTACGATTACTTCCAGAGAGCTGTTGGAGCTGTGTGTGGGAGTAAAGGTACCGACTTTGTTTACTCCGTCGA GTACTTCTGCTGCGATCGTCCTAATCCGTTACTTCAGGTAATTGGGTTTGTGAATTTGGTTCAGAAGCTCGTTTCAGTTGACTTTGAGTTGCCTTTGCCT TTGCCTTTGAATTGTGTTAATGAAATTTTTTATGTGGCTATAATCGGAGGAATCTATTACATGATTGCAAGCTCATGCTTCGTCTATATTCCTGGTTACT ATCTAAGTGAATCACATAGATATATAAGCTTTGCAGCAGTTGGTTTTGGCATTTTGCTCTTCATCTTAACAAGCTTCTCCGATCCCGGAACAGTAAAGCC TGAGAATGTAGCGCAGTATCTCGATGCATATCCTTATGATGATGTTCTGTTCAAAGAGAAAGACTGTTCTACATGTAAACTTCCAAAACCGGCTAGATCA AAGCACTGCAGTATATGTAACCGGTGTGTCGCCCGGTTTGACCACCATTGCGGTTGGATGAATAACTGTATCGGGGAGCGAAATACCCGCTACTTCCTAG GTTTTCTTCTATGGCATTTCCTTCTTTGTCTATACGGAACTGTTGCGATTGGGCTAATTCTCGCAGGACAGTTGAAAGAACTGAGAATTGTTCATGTTCT CACAGTTTACTATGGAATAGAGAACACGTTTCGTGATTTGTCTCCTCATGTTGTCCAATGGCTATTGTCCTCATTCAACACTCAAATACTTGTCATGATA TTTCTCGCCATAGTTTCCCTCTTATTATCCGGATTCTTCGGGTACCATGCCAACCTCTGTCTCACCAACACCACAACGAACGAGACTTTCAAGTGGCAAG AGCACCTAACGTGGCAGAAGAAACTACACGAAGCTCAAGCAAGCATCAGTGACTTGGGCAGCAAGGAAGTGAAGCCTATACAAGAAAGTAAATGCAAAGC CTTTTTCTGGAGATCCCGGCTCGAGAATGATGCTGAGGTTGTTACGAGGCAGAACACGTACGATAAGGGATTCTTCTGCAACCTTGGCGAGGTCATATTT CCATTCTCGTCAAGACCATCTTTTTCCCGGGGGAAATCAAAGGCTGACTGA
AA sequence Show only first row Show all	>Lus10004149 pacid=23157537 polypeptide=Lus10004149 locus=Lus10004149.g ID=Lus10004149.BGIv1.0 annot-version=v1.0 MQWILLCHGLITLLVVISFLCGQWPIFHGTFIQRFHHFLTSGSYDYFQRAVGAVCGSKGTDFVYSVEYFCCDRPNPLLQVIGFVNLVQKLVSVDFELPLP LPLNCVNEIFYVAIIGGIYYMIASSCFVYIPGYYLSESHRYISFAAVGFGILLFILTSFSDPGTVKPENVAQYLDAYPYDDVLFKEKDCSTCKLPKPARS KHCSICNRCVARFDHHCGWMNNCIGERNTRYFLGFLLWHFLLCLYGTVAIGLILAGQLKELRIVHVLTVYYGIENTFRDLSPHVVQWLLSSFNTQILVMI FLAIVSLLLSGFFGYHANLCLTNTTTNETFKWQEHLTWQKKLHEAQASISDLGSKEVKPIQESKCKAFFWRSRLENDAEVVTRQNTYDKGFFCNLGEVIF PFSSRPSFSRGKSKAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	0	1
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	2.2	0.9200
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	2.4	0.9235
AT3G61260			Remorin family protein (.1)		Lus10014785 [exp]	3.9	0.8926
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	4.0	0.9249
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	4.9	0.9217
AT3G27210			unknown protein		Lus10035217 [exp]	5.8	0.8829
					Lus10004148 [exp]	6.9	0.8934
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	6.9	0.9070
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	7.7	0.8964
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	7.9	0.9043

Compare expression of checked genes

Lus10004149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.