Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05860 76 / 5e-16 MADS MADS-box transcription factor family protein (.1.2.3) AT5G26650 77 / 7e-16 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 74 / 1e-14 MADS AGL90 AGAMOUS-like 90 (.1) AT2G40210 70 / 2e-13 MADS AGL48 AGAMOUS-like 48 (.1) AT5G48670 68 / 7e-13 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G26580 67 / 3e-12 MADS AGL34 AGAMOUS-like-34 (.1) AT5G06500 64 / 7e-12 MADS AGL96 AGAMOUS-like 96 (.1) AT1G31630 64 / 2e-11 MADS AGL86 AGAMOUS-like 86 (.1) AT1G31640 63 / 6e-11 MADS AGL92 AGAMOUS-like 92 (.1) AT5G26630 59 / 4e-10 MADS MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021399 [exp] 108 / 1e-28 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1) Lus10016180 [exp] 106 / 4e-27 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10029367 [exp] 103 / 7e-26 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10022325 [exp] 83 / 2e-18 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10012154 [exp] 79 / 2e-17 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10007592 [exp] 76 / 3e-16 AT5G26650 66 / 8e-13 AGAMOUS-like 36 (.1) Lus10022316 [exp] 69 / 2e-13 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 69 / 2e-13 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10014578 [exp] 59 / 5e-10 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201700 [exp] 105 / 2e-25 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 97 / 1e-23 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 84 / 3e-18 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 64 / 8e-12 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 62 / 1e-11 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.013G001700 [exp] 61 / 2e-10 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.001G329800 [exp] 53 / 1e-07 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 51 / 4e-07 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.004G131100 [exp] 49 / 9e-07 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.001G058200 [exp] 48 / 2e-06 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10004150 pacid=23153305 polypeptide=Lus10004150 locus=Lus10004150.g ID=Lus10004150.BGIv1.0 annot-version=v1.0 ATGGGTGGAAAGAAGGTTGAACTCGTCAGGATAGTGGACGAGTCCGCTAGAAAACAAAGCATGACGAGGAGACAAAAAGGTATAATGAAGAAGGTCGACG AACTTACCACTCTATGTGGGGTTCCCGCCGTGTGCATCATCAACAGCCCAGCAGTTCCCGGTGCGGCCCCTAAGCCGCCATTGGTCTGGCCATCTAACGA TGATGAACAAGTAAGGCAGTTGATACAACGATACTACTCCATTTCAGAGGCGGAAAGGGAGAAGAAGAAGACTGATCAAGAGACGTATCTCGAAGAAATG ATCGCCAAGACGGAACTCAAGCACAGCAAGCTGAAGAAAAAGAATGAGAACCGAGAGGCGGAACTCTTGATGGATGAGGTTCATTTCGGGAAAGGTTTGA ATGGAATGGATATGAATGAACTCGACACCATCAAACGGCTGCTGACTCAAAGACTAAATGTATTCAGTACAAAACGGGGTGGACAACCACAGCAGCCGCC GACTCAGGCTCCTGAAGATGGACCACAATGTTCACCCAATTTACCTATTCGGTTTGGTGTGGGGAACCAACCGGTGGAGATGGGTGTAGCAGATATGGAT GTAGACCCCACGGGTCCGATTAATACTCACAATGTTTTTCCAGATCCACAACGTTTCAGCAGTGCATATGAAATGGGGCAAGGCAGCGGGAGCGGTGGCA TCGTCGACAATGGAGACTTGTCTATCATGTTTGTCAATGCAAGAGAGGTAGCAAATTCACATGGTAATAATTTCAGTACTCCTTCAGCGCCAGCGGCAGA GCGCACCTCCGAGCTGGCTCAGGTTCCAACGACTAGGGTTGATGGTGAAGGAGACGATCTCAATCTTAATTGTTTGAGGTCGGTGGAATCAAGGCAGCAG AAACCTCAACTATAA
AA sequence Show only first row Show all	>Lus10004150 pacid=23153305 polypeptide=Lus10004150 locus=Lus10004150.g ID=Lus10004150.BGIv1.0 annot-version=v1.0 MGGKKVELVRIVDESARKQSMTRRQKGIMKKVDELTTLCGVPAVCIINSPAVPGAAPKPPLVWPSNDDEQVRQLIQRYYSISEAEREKKKTDQETYLEEM IAKTELKHSKLKKKNENREAELLMDEVHFGKGLNGMDMNELDTIKRLLTQRLNVFSTKRGGQPQQPPTQAPEDGPQCSPNLPIRFGVGNQPVEMGVADMD VDPTGPINTHNVFPDPQRFSSAYEMGQGSGSGGIVDNGDLSIMFVNAREVANSHGNNFSTPSAPAAERTSELAQVPTTRVDGEGDDLNLNCLRSVESRQQ KPQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	1.0	0.9987
					Lus10019052 [exp]	1.4	0.9966
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	2.4	0.9691
					Lus10001031 [exp]	18.6	0.9335
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10026288 [exp]	23.0	0.9683
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	26.6	0.9655
					Lus10035120 [exp]	28.7	0.9122
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	32.2	0.9424
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	37.2	0.9403
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	37.7	0.8432

Compare expression of checked genes

Lus10004150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.