Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30860 194 / 1e-62 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 187 / 7e-60 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT3G03190 187 / 9e-60 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G47730 180 / 2e-56 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02950 175 / 1e-54 GST31, ATGSTF4 GLUTATHIONE S-TRANSFERASE 31, glutathione S-transferase F4 (.1.2.3.4) AT5G17220 172 / 6e-54 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 171 / 2e-53 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02920 165 / 2e-51 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 165 / 3e-51 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT4G02520 161 / 9e-50 GST2, ATPM24.1, ATGSTF2 glutathione S-transferase PHI 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005634 [exp] 390 / 1e-139 AT2G30860 177 / 1e-55 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 219 / 3e-72 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 215 / 5e-71 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 210 / 6e-69 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 207 / 8e-68 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10020736 [exp] 205 / 4e-67 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 204 / 1e-66 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10026643 [exp] 194 / 1e-62 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 192 / 1e-61 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015200 [exp] 342 / 5e-121 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 304 / 7e-106 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 202 / 9e-66 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207093 [exp] 194 / 1e-62 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 184 / 2e-58 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 181 / 2e-57 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207672 [exp] 179 / 2e-56 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.014G132200 [exp] 177 / 5e-56 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.001G105600 [exp] 68 / 2e-13 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.004G232600 [exp] 65 / 1e-12 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004151 pacid=23153329 polypeptide=Lus10004151 locus=Lus10004151.g ID=Lus10004151.BGIv1.0 annot-version=v1.0 ATGGCGGCGATTGCTCCGGTGAAGGTTTACGGTCCGGCGGTGTCGACAGCGGTGTCGAGAGTGCTAGCTTGCCTTATAGAAAAAGATGTCCCTTTCCAGC TCGTCCCAGTGGACATGTCCAAAGGCGAACACAAAAAGCCTGATTTCCTCAACATCCAGCCCTTCGGCCAAGTCCCCGCCTTCCAAGACCACCAGATCTC CCTCTTCGAGTCAAGAGCAATTTGCCGGTACATATGTTCCAAGTACCCAACCAAAGGTAACAAGTCACTGTACGGCACAGACCCACTCTCCCAAGCCTCC ATCGACCAATGGCTAGAAGCAGAGTCACAGTCCTTCAACCCACCCAGTGGCACCCTCGTTTTCCAACTCGCATTTGCCCCGAGGATGAAGATCCCGCAGG ACAAGAAAGCAATCAAGCTCAATGAGGACAAGCTGGGGAAAATTCTGGACGTGTACGAGAATAGGCTAGGCGAAAGCCGGTATTTGGCCGGCGACGAGTT CTCGCTGGCCGACCTTTCTCACTTGCCCAACGCCGATTACCTGGTGACGGCGGCTGGAAAGGAAGAGATGTTCAGCTCGAGGAAGAATGTTGGGAGGTGG TTGGATGAAGCTATGGGGAGGGAAAGTTGGAAGAAAGTCAAGGAGTTGCGCAACAACTGA
AA sequence Show only first row Show all	>Lus10004151 pacid=23153329 polypeptide=Lus10004151 locus=Lus10004151.g ID=Lus10004151.BGIv1.0 annot-version=v1.0 MAAIAPVKVYGPAVSTAVSRVLACLIEKDVPFQLVPVDMSKGEHKKPDFLNIQPFGQVPAFQDHQISLFESRAICRYICSKYPTKGNKSLYGTDPLSQAS IDQWLEAESQSFNPPSGTLVFQLAFAPRMKIPQDKKAIKLNEDKLGKILDVYENRLGESRYLAGDEFSLADLSHLPNADYLVTAAGKEEMFSSRKNVGRW LDEAMGRESWKKVKELRNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	0	1
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	2.0	0.9313
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	4.6	0.9116
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	5.1	0.9182
AT3G20680			Domain of unknown function (DU...		Lus10006344 [exp]	5.8	0.8744
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	7.1	0.8986
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	9.0	0.8868
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	10.0	0.8704
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	10.6	0.8592
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	12.6	0.9099
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	13.1	0.8705

Compare expression of checked genes

Lus10004151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.