Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 588 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 575 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 574 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT3G14810 555 / 2e-179 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 547 / 9e-177 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 546 / 8e-176 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 520 / 2e-166 Mechanosensitive ion channel family protein (.1) AT5G12080 409 / 2e-126 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 376 / 4e-114 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT2G17010 356 / 1e-106 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005630 [exp] 785 / 0 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 619 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 609 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 598 / 0 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10038148 [exp] 583 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 582 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10041845 [exp] 553 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 520 / 4e-171 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10005556 [exp] 511 / 1e-166 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246600 [exp] 688 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.002G015400 [exp] 682 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 661 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 618 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 581 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 572 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 562 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G178900 [exp] 552 / 6e-178 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 551 / 3e-177 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 547 / 6e-176 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10004153 pacid=23153304 polypeptide=Lus10004153 locus=Lus10004153.g ID=Lus10004153.BGIv1.0 annot-version=v1.0 ATGGGGGACACGGATAGCTGTAGCAGCAGAGCCGTGGAGTTCGTTCCGGCTATGAATAGAAATCGGAGGCAAAAAGTAGAGGTTTACAATGAAGTTCTCC GCCGGCTCAGGAATTCCAATGACCAAGAAGCTAGTCTTCCCGGCTTCGAAGACGAGCTCTGGAATCATTTCCTTCGGCTTCCTACTAGATATGCACTGGA AGTGAACGCAGAAAGGGCACATGACGTCCTTATGCACAAGAGATTGCTGCAGATGGCTCATAATCCTGCTACTAGGCCGGCAATTGAGGTCCGGCTCGTG CAGCAATGGCAGTTTGCTTTGGACTCGGTTGCTTTTAAGGTTCAAATTGTTTTTATTCAAGCTGTTTTCACGCAGGTTTATTCTGCAGCCCATGGGCATT ATGGTGACTCTAGTGAAACTGAATTTTCTATGGAAAAGCTATCTCAATTTTCTGATCAACCCTGGAAGCAGAGGCATGGATGGGTTTATCCACATACTGT TAAGGTTTCATTTGCTTTCAGGGTAGTTCTAATTAAAAAGCTGACATGTTTGGACTCTTCCTCTGATTTCAGTCTCCATCCACCACCTGCCTTTGGTTCA TTGCCTGACCTAGACCTTGCATATGGAGCTCAAGATAAGGATACTGGCCATGCAATTTATTCCCGCCTTATGCACGAGATTACAATATCCACAAGTGATA AGCCAAAGCTTCTCAGTCAGTTGACTTCCTTGCTCTCTGAGATTGAGCTAAATATACAAGAAGCGCTTGCTTTTTCTACAGCTGATGGGTACTCATTAGA TGTGTTTGTTGTTGACAATTGGAGTCCTGAGGAGTTGGAGCAACTTAGGGTAGTGCTGGAGCGTGAAATACCAAAGATTGAGCAAGACCAAAGAGGAACC AATTATAGATCTTCTGATATGAGCATTCCTACGGCGTCAATCGATGTTTGGGAAATAGATGCAACATTATTGAAGTATGAATTCAGAATTGCATCTGGAC CCTATGGTGACATGTATAAAGGTACCTTCTGTGGTCAAGATGTGGCTATTAAGCACTTCAGGGCGGAGCACCTAAGTGGTAAACTTCGAAAGGAATTTGC TCAAGAAATCTTTATTCTGAGGAAAGTCCGGCACAAGAATGTTGTTCAATTTGTCGGTGCATGTACCAGACCTCCAAACCTCTGTATCCTGACAGAATTC ATGTCTGGTGGAAGCATGTACGACTATCTGCATAAAAGAAAGGAAATGTTTACATGTCAGTCCTTGGTTAAAGTGGCATCTGATGTATCCAGGGGAATGA ACTACCTGCACAGAAATAGTATAATACACAGAGACCTGAAAGCTGCCAATCTTCTGATGGATGAAAATGGAATAGTCAAGGTGGCTGATTTTGGTGTTGC CAGAATGCAAGATCATTCAGGTGTGATGACTGCAGAAACTGGAACGTACCGTTGGATGGCTCCAGAGGTGATGGCGGTGGAGGCAGAGCTCGTGTTAAGT GACGGCGGCAGAGGAGACTGCTGTCGAGAAGTACCAGAAAAGATGAAGGTTATTGGACACAAGCCTTACAATCATAAAGCTGATGTATTCAGCTTTGGTG TTGTGTTGTGGGAATTGCTTACAGGGAAGATTCCTTATGAAAACTTAACCCCATTACAAGCTGCAGTTGGTGTTGTACAACAGGGCCTGAGACCATCCGT TCCGAGGAATACCCATCCCAAAGTGGTTGAACTTCTTGAGAGATGCTGGGACCAGGACCCATGTTTGAGGCCTGAATTCTCTGAAATTTTGGAACTCCTA CAAAATTTACAGAAGATGAGGCGCACTTGTGCAAGGAACGTCGGTGGAGGCTCTGATCACATGGACACTGAAGCATCTACAAGGAAAAGGTACTTGGATG TTAGATTATTTGGACTTAGACAAGAGGGCCTTTCTACAATGGAAAGTCTGAGAAGCTCCTTGAAATCTTGCTGTTCTCATGCCAACCTGCAACGACAAGA TTATCTTGACCAAGAAAAAAAGGAAGCTCTCTTGAACCAGATCGACCGCAATTCCCATCCGGTCAGGATATCTAATTTTCCTGGCAAGGAAGACCAGTTG GTAGTTGACATCCATAATGCCACGCCCTGCAAAGGAACAAAGGAGACTGCTTCAAAGCACTCTAATCCGGCAAAGCCTAAGCTTTCCTTTGCTGAAATTG CAGAGGAAGCTATGTGGTTCAAATCAGATAAAGAAGAAAGCCAACCATCACAGAATGATCCTTTCCGCCGTAACCCATGGAGGTCACTTATGATCAGAAC AAGGTCCAGACTAATCGAAGACCTTCCAGATGAAGAATACATCACAAGTGATTCTGAGAAAGAAGAAGTTTTAGAAGAAGAAGATGACCATGATGAAGAT GTCTCATACAAGAACAGAGGAGGCAACACTGTCAGAATGCTACTTTATCTGGCTCTTATCTCTACTCTTGCCGCCTTAATTTGCACGCTTTGCGTCTCTG CAATGAGGAAGATAACACTCTGGGACCTTCCACTGTGGAAATGGGAGATAATGGTTTTGGCACTCATGGGTGGCAATTTGGTCTCCAGTTGTGGGGTTAA GCTCGTCGTGATCCTCATTGAGCGTAGCTTCCTTCTGCAGAAACGAGTTCTGTACTTCGTTTACGGGCTGAAGAAGCCAGTTCAGAACTGTATCTGGCTG GGTTTGGTTTTGCTCGTTTGGCACTGGGTTTTCAATGACAAGATCAAGGAACAGACTCATAGTATAATATTGCCTTATGGGACCAAGATTTTAGCTTGTC TCTTGGTTGGAACGTTGATCTGGCTGGTGAAGACCCTCTTTGTCAAAGGTCTTGCTTCTTCTTTCCACGAGAACACTTTCTTTGAACGAATCCAGGTGGC TCTCTTCAACCAGTACGTAATCGAGACACTTTCTGGTCCACCAGTCTTTGAAGTCGAAAGTGAATCGAGCAGTAAAGAGACGAAGCTACAAAAGTGCTCC ACCATCGGTGGAAAGTTGTCAAGGTTGTCTAGGACAGTTTCTAGCAGAAGGAATGAAGAGATCACAATAGACGAGCTGCAGACTCTGAGCAAGAAGAACA TTTCGGCTTGGACAATGAGAAGAATGATCAACATCGTTCGCAAAGGTTCATTGTCTACTCTGGATGAACACATACTTGATTCAGACATGAAAGACGAGTC TTCGTTGCACATCAGGAGTGTTTGCCAAGCAAAGGAAGCAGCCAAGAAAATATTTGCTAATGTGGCTGCTCCAGGATTCCAGCATATCTTCATTGCCGAC TTGCTGCGCTTCATGGCTAAAGAAGAGGCTTTGAGAGCCATGCATCACTTTGGACCAGGATCTGAGAATGGAGGGATTAGCAGATCATTACTCACTGAGT GGCTGGTTAATGCATTCAGGGACAGGCAAGCGCTTGCACTGTCACTTAACGACACGAAAACAGCTGTCGACGAACTCCACAACATGCTCAACTTCATTGT AGCAGTTATCATCATAATAATCTGGCTTGTCATGCTGGGAATCCCCATTACTCACTTCCTGGTTCTCTTAAGCTCACAGCTTCTTCTGGTGGCTTTCATT TTTGGCAATTCCTGCAAAACGACCTTTGAAGCCATCATTTTTTTGTTCGTCATGCACCCTTTCGATGTCGGAGACCTTTGTGAAGTTGATGGAACCCAGA TGAGAGTGGAGGAGATGAACATCTTAACCACAGTGTTCCTCAAGTCCAATTACCAGAAGATAACATTCCCAAACAGTGTTCTCTCCACCAAACCGATCTC CAATTTCTACCGCAGCCCAGATATGACGGAGGCAATCCACTTTTGTGTCCACATCTCAACTCCAATGGACAAGATCTCCGCTATGAACGACCGGCTAAAA GCGTACGTGGAGCGGCATAAGCAGTACTGGTACCCAACGGTGTCGGTGTTTATAAATGAGGTGGAAGACATGAACAAATTGCAGATGCAAGTGGTTGCGA GGCACAGGATGAACTTCCAGAATATGGGAGATAGATTTACGAGGAGGGGGCATCTGATTAAAGAACTCATCACGATGTTTCGAGACTTAGAACTCGAGTA CCGAATGCTTCCACTTGATGTCAACGTGCGAAATCTGCCGTAA
AA sequence Show only first row Show all	>Lus10004153 pacid=23153304 polypeptide=Lus10004153 locus=Lus10004153.g ID=Lus10004153.BGIv1.0 annot-version=v1.0 MGDTDSCSSRAVEFVPAMNRNRRQKVEVYNEVLRRLRNSNDQEASLPGFEDELWNHFLRLPTRYALEVNAERAHDVLMHKRLLQMAHNPATRPAIEVRLV QQWQFALDSVAFKVQIVFIQAVFTQVYSAAHGHYGDSSETEFSMEKLSQFSDQPWKQRHGWVYPHTVKVSFAFRVVLIKKLTCLDSSSDFSLHPPPAFGS LPDLDLAYGAQDKDTGHAIYSRLMHEITISTSDKPKLLSQLTSLLSEIELNIQEALAFSTADGYSLDVFVVDNWSPEELEQLRVVLEREIPKIEQDQRGT NYRSSDMSIPTASIDVWEIDATLLKYEFRIASGPYGDMYKGTFCGQDVAIKHFRAEHLSGKLRKEFAQEIFILRKVRHKNVVQFVGACTRPPNLCILTEF MSGGSMYDYLHKRKEMFTCQSLVKVASDVSRGMNYLHRNSIIHRDLKAANLLMDENGIVKVADFGVARMQDHSGVMTAETGTYRWMAPEVMAVEAELVLS DGGRGDCCREVPEKMKVIGHKPYNHKADVFSFGVVLWELLTGKIPYENLTPLQAAVGVVQQGLRPSVPRNTHPKVVELLERCWDQDPCLRPEFSEILELL QNLQKMRRTCARNVGGGSDHMDTEASTRKRYLDVRLFGLRQEGLSTMESLRSSLKSCCSHANLQRQDYLDQEKKEALLNQIDRNSHPVRISNFPGKEDQL VVDIHNATPCKGTKETASKHSNPAKPKLSFAEIAEEAMWFKSDKEESQPSQNDPFRRNPWRSLMIRTRSRLIEDLPDEEYITSDSEKEEVLEEEDDHDED VSYKNRGGNTVRMLLYLALISTLAALICTLCVSAMRKITLWDLPLWKWEIMVLALMGGNLVSSCGVKLVVILIERSFLLQKRVLYFVYGLKKPVQNCIWL GLVLLVWHWVFNDKIKEQTHSIILPYGTKILACLLVGTLIWLVKTLFVKGLASSFHENTFFERIQVALFNQYVIETLSGPPVFEVESESSSKETKLQKCS TIGGKLSRLSRTVSSRRNEEITIDELQTLSKKNISAWTMRRMINIVRKGSLSTLDEHILDSDMKDESSLHIRSVCQAKEAAKKIFANVAAPGFQHIFIAD LLRFMAKEEALRAMHHFGPGSENGGISRSLLTEWLVNAFRDRQALALSLNDTKTAVDELHNMLNFIVAVIIIIIWLVMLGIPITHFLVLLSSQLLLVAFI FGNSCKTTFEAIIFLFVMHPFDVGDLCEVDGTQMRVEEMNILTTVFLKSNYQKITFPNSVLSTKPISNFYRSPDMTEAIHFCVHISTPMDKISAMNDRLK AYVERHKQYWYPTVSVFINEVEDMNKLQMQVVARHRMNFQNMGDRFTRRGHLIKELITMFRDLELEYRMLPLDVNVRNLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	0	1
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	1.4	0.9692
					Lus10003556 [exp]	2.4	0.9637
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	3.9	0.9479
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	4.5	0.9433
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	6.0	0.9290
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	6.6	0.9436
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	6.6	0.9317
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	7.2	0.9224
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	7.3	0.9091
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	7.7	0.9406

Compare expression of checked genes

Lus10004153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.