Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11880 53 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1) AT3G14390 52 / 2e-07 Pyridoxal-dependent decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005629 [exp] 392 / 1e-138 ND / Lus10042305 [exp] 58 / 6e-09 AT5G11880 806 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10023548 [exp] 50 / 2e-06 AT5G11880 809 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Lus10040433 [exp] 50 / 2e-06 AT5G11880 813 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246300 [exp] 456 / 2e-160 AT3G14390 58 / 6e-09 Pyridoxal-dependent decarboxylase family protein (.1) Potri.002G015800 [exp] 394 / 1e-136 AT5G11880 54 / 1e-07 Pyridoxal-dependent decarboxylase family protein (.1) Potri.009G119300 [exp] 56 / 2e-08 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1) Potri.004G157500 [exp] 55 / 4e-08 AT5G11880 815 / 0.0 Pyridoxal-dependent decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00278 [flax] [poplar] Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain CL0036 [flax] [poplar] TIM_barrel PF02784 [flax] [poplar] Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence Show only first row Show all	>Lus10004154 pacid=23153314 polypeptide=Lus10004154 locus=Lus10004154.g ID=Lus10004154.BGIv1.0 annot-version=v1.0 ATGGTTGCGATTTTAACTTCAGGCCTCCAAGGCATAATAACTGCCCCTGGAGTTAAGGGCAGAACCGTCACTTCCCTACCCGATGGCGCCCTTACGGATT TCCTCCGTTCCATTATCAAAGATCCCGACACCGCCGGAGAGCCCTTCTACGTCCTCGATCTAGGAATCATCGCTTCTCTCATGGACGTCTGGTCAAAATC GCTCCCCATCGTCCAACCTTTCTACGCCGTCAAGTGCAATCCGGAAAAGGCTCTCCTCGGCACCCTCGCCCACCTCGGCGCCAGCTTCGACTGCGCCAGC CGAGCCGAGATCGAATCCGTGGTGTCCGTCGGGGGGTCTCCCCACAAAATCGCATTTCCGAGGTGTCCCTTGGGGCCCAAATACGGAGCGCTGGAAGACG AAATCGAGCCTCTGCTCCAAACGGCTCAGTCTCTCCGGCTTCCAGTCGTCGGCGCTTCGTTCCACATCGGGAGCGGCGCCACCGAATCCGGCGCCTACCG AGGAGCTATGCAGTCGGACGGATCTTTTAGCGATACGGCTTTTCGGCTCGGGATGCCGCGAATGCACATGCTGGACATTGGGGGAGGTTTCACCTCCGGC TCGCAATTCGAAGATGCAGCTACGGAAATCCGAGCCGCGCTGGATGAGTGTTTCTCAGGGGAGCCGGGTTTGAAGGTGATAAGCGAGCCGGGTCGGTTCT TTTCGGAATCTGCTTTCACTTTAGCGGCCACGATCATCGGGAAGCGCGTGAGGGGAGGGCAAAGGGAGTATTGGATAAACGACGGCCTTTACGGGTCGAT GAATTGCATTCTTTACGACCACGCGACCGTTAGGTGCGCGCCTTTGGCGTTAATTTCAAACCCTGGGGACCCTTCGTGCGAAGTGGCGGCGGCAAAGTAC AGCTCGACGGTGTTTGGTCCCACGTGCGACGCCCTTGACACGGTGTTCACCGGGCGGTTGCTGCCGGAGCTTAAGGTCAATGACTGGCTAGTGTTTTCCG ACATGGGGGCCTATACGGCGGCTGCCGGGTCAAACTTTAATGGGTTCAGTGCTGATCGAATTTTGACTCATCTTGCCTACACCAGTACTGTTAATCCCAA TTGA
AA sequence Show only first row Show all	>Lus10004154 pacid=23153314 polypeptide=Lus10004154 locus=Lus10004154.g ID=Lus10004154.BGIv1.0 annot-version=v1.0 MVAILTSGLQGIITAPGVKGRTVTSLPDGALTDFLRSIIKDPDTAGEPFYVLDLGIIASLMDVWSKSLPIVQPFYAVKCNPEKALLGTLAHLGASFDCAS RAEIESVVSVGGSPHKIAFPRCPLGPKYGALEDEIEPLLQTAQSLRLPVVGASFHIGSGATESGAYRGAMQSDGSFSDTAFRLGMPRMHMLDIGGGFTSG SQFEDAATEIRAALDECFSGEPGLKVISEPGRFFSESAFTLAATIIGKRVRGGQREYWINDGLYGSMNCILYDHATVRCAPLALISNPGDPSCEVAAAKY SSTVFGPTCDALDTVFTGRLLPELKVNDWLVFSDMGAYTAAAGSNFNGFSADRILTHLAYTSTVNPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10004154 [exp]	0	1
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	3.2	0.9922
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	3.5	0.9937
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	3.7	0.9931
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	6.7	0.9930
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	7.5	0.9923
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	9.8	0.9909
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	11.3	0.9671
					Lus10032178 [exp]	11.5	0.9909
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	11.7	0.9909
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	14.5	0.9902

Compare expression of checked genes

Lus10004154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.