Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1051 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 842 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 831 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 814 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 804 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 798 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 630 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 629 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 619 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 452 / 1e-147 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005627 [exp] 1291 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 1028 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 1009 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 1008 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 928 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 830 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 826 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 760 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 760 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016100 [exp] 1152 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1122 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 1055 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 1051 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 1012 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 828 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 824 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 805 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.006G253900 [exp] 630 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.018G131200 [exp] 626 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10004156 pacid=23153309 polypeptide=Lus10004156 locus=Lus10004156.g ID=Lus10004156.BGIv1.0 annot-version=v1.0 ATGAGATGCGTGACGTCTACCTTCACGGCGATCTACATCTTACGATCGTGGAAGCTAGGCAGTTGCCAAACATGGATTTGCTGTCGGAGCGTGTCCGGCG GGGGTTTTTGGCGCTCTAAACATGCAGTGAGACATTCTCTCGGCCTCGGCCACATCGAGTTCTTCGTCAAGGACAACGACGTCTTCGGCGCCGATTTGAT CGGCGTTGCGTCAGTCCCCGTAGGCAGGATCGCCGCAGGCCAGTGCATACGGGAATGGTTCCCGATCATCAGCTCCTATGGGAAGCCGCCGAAGCCCGAC TGTGCGATGCTGATCGAGATGAAATTCGTCAAGTGCGAGGAGAATCCGCTATACAAAATCGGGTTGGCGGAGAACCCGAACCGGTACAGTATACCGAACT GTTACTTCCCGTCCCGACCCGGGAGTTCGCTGACGCTGTACCAGGATGCGCACGTGCCAGACGGAATGCTGCCGGCGATCGAATTGGACGACGGGATTGT TTACAGGCATGGGAAGTGCTGGGAAGAGATTTCGGAGGCAATATCGGAAGCTCACCATTTGGTTTATGTGGTTGGATGGTCGGTGTTTCATAAGGTGAAA TTAGTGAGGGAACCCAGCAAGCCATTGTCCAGTGGTGGGAATTTGAGCTTGGGGGATTTGCTCAAGTATAAATCCCAGGAAGGTGTTAGAGTTCTGATGC TGGTTTGGGATGACAAGACTTCTCATAACAAGTTCTTCATTAACACGACGGGAGTGATGCAAACCCACGACGAGGAGACTCGAAAGTTTTTCAAGCATTC TTCTGTGAAATGTGTGCTGTCGCCGCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGCATGCTTTACACGGTGTTTTCCTCTCTTCTGTAGC ATCCGTTTTTGCTTACTTGTTGTCGGGACCCTATTTACACACCATCAGAAATGTGTGATTGTGGATACACAAGCTTCTGGAAATAACAGGAAGATAACTG CTTTCCTTGGAGGCCTAGATCTTTGCGATGGCCGCTATGACACACCTGAACACCGTCTATATCGCGATGTTGACACCGTATTCGATGGAGATTTTCATAA TCCGACCCTTCCTGTTGGGGCTAAGGGTCCAAGGGAACCGTGGCATGATCTGCATTGCAAAATTGAAGGACCTGCTGCTTACGATGTACTGACAAATTTT GAGCAGCGCTGGAAGAAAGCCGCCAAATGGTCAGAGTTTGGACGAAGGTTCAAAACAGTAAGCCATTGGCACGATGACTCCTTAATAAAGTTAGAGAGGA TCTCATGGATACTTAGTCCCTCGCCATCGGTTGCCAGTGATGATCCTTCACTGTGGGTTACTGAGGAAAAAGACCCTGAAAAATGGCATGTTCAGGTCTT CCGCTCTATAGATTCAGGATCTTTGAAAGGGTTTCCCAAAGATGTTTTCCAGGCAGAGGCTCAGAATCTGGCCTGTGCTAAAAATTTGGTGATCGACTGG AGCATTCAAACAGCTTACATTCAGGCAATAAGATCTGCTCAACACTTTGTATATATTGAGAACCAGTACTTCATTGGATCCTCTTATGCATGGCCAGCTT ACAAAGAAGCAGGTGCTGATAATTTGATTCCGATGGAGCTGGCATTGAAGATATGTAGCAAGATAAGGGCTAGAGAGAAGTTTGCTGTTTATATTGTCAT ACCAATGTGGCCCGAGGGGCTTCCTTCTTCCACCACGGTGCAAGAAATCCTATTTTGGCAAGGACAGACAATGCAAATGATGTACAGACTGATAGCAGAA GAGCTGAAATCCGTGAATATGGAGGATGCCCATCCTCAAGATTACTTGAACTTCTTCTGCCTTGGCAACAGAGAAAAACTCCCTAAAGACAAGTTGCCTA GCTCTACCACCAAACCTTCCAACGCGGCTGAAGTGATCTCAAGCTGCCACAAGCACCAACGGTTCATGATCTATGTCCATGCAAAGGGGATGATCGTAGA CGACGAGTATGTTATCATTGGATCAGCCAACATCAACCAAAGATCAATGTCGGGTTCACGCGACACCGAGATAGCAATGGGAGGGTACCAGCCAAACCAC ACTTGGGGCAACAAGAAACGACACCCTAGAGGGCAGGTGTATGGATACAGAATGTCTCTATGGGCAGAGCACTTGGGGAAAGTAGAGGAGGTGTATAAAG AAGCAGAGAGTGCGGAATGCGTCAAGGAAGTGAACAAAGTTGCAGAAGAGAACTGGGAGAAATTCACTTCAGACAAGTTTAAGCCTTTGCAGGGACACCT TCTCAAGTACCCAGTCCAGGTTGATCAAGATGGGAAAGTAAATCCTTTGCCTGGACATGAGACTTTCCCAGATGTTGGTGGCAAAGTTCTTGGAGCTCGT ACAACACTTCCAGATGCATTGACTACATAG
AA sequence Show only first row Show all	>Lus10004156 pacid=23153309 polypeptide=Lus10004156 locus=Lus10004156.g ID=Lus10004156.BGIv1.0 annot-version=v1.0 MRCVTSTFTAIYILRSWKLGSCQTWICCRSVSGGGFWRSKHAVRHSLGLGHIEFFVKDNDVFGADLIGVASVPVGRIAAGQCIREWFPIISSYGKPPKPD CAMLIEMKFVKCEENPLYKIGLAENPNRYSIPNCYFPSRPGSSLTLYQDAHVPDGMLPAIELDDGIVYRHGKCWEEISEAISEAHHLVYVVGWSVFHKVK LVREPSKPLSSGGNLSLGDLLKYKSQEGVRVLMLVWDDKTSHNKFFINTTGVMQTHDEETRKFFKHSSVKCVLSPRYASSKLSIFKQQACFTRCFPLFCS IRFCLLVVGTLFTHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLYRDVDTVFDGDFHNPTLPVGAKGPREPWHDLHCKIEGPAAYDVLTNF EQRWKKAAKWSEFGRRFKTVSHWHDDSLIKLERISWILSPSPSVASDDPSLWVTEEKDPEKWHVQVFRSIDSGSLKGFPKDVFQAEAQNLACAKNLVIDW SIQTAYIQAIRSAQHFVYIENQYFIGSSYAWPAYKEAGADNLIPMELALKICSKIRAREKFAVYIVIPMWPEGLPSSTTVQEILFWQGQTMQMMYRLIAE ELKSVNMEDAHPQDYLNFFCLGNREKLPKDKLPSSTTKPSNAAEVISSCHKHQRFMIYVHAKGMIVDDEYVIIGSANINQRSMSGSRDTEIAMGGYQPNH TWGNKKRHPRGQVYGYRMSLWAEHLGKVEEVYKEAESAECVKEVNKVAEENWEKFTSDKFKPLQGHLLKYPVQVDQDGKVNPLPGHETFPDVGGKVLGAR TTLPDALTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10004156 [exp]	0	1
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	3.3	0.7556
					Lus10033246 [exp]	8.8	0.6675
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10012765 [exp]	9.1	0.7257
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	21.8	0.6057
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	33.7	0.6726
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	37.6	0.6749
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	43.0	0.6306
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005805 [exp]	48.0	0.5426
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	50.7	0.6683
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10022218 [exp]	53.4	0.6494

Compare expression of checked genes

Lus10004156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.