Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16980 379 / 1e-127 Major facilitator superfamily protein (.1.2) AT2G16990 353 / 1e-117 Major facilitator superfamily protein (.1.2) AT2G16970 340 / 2e-112 MEE15 maternal effect embryo arrest 15, Major facilitator superfamily protein (.1) AT5G42210 282 / 3e-92 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005626 [exp] 801 / 0 AT2G16980 396 / 4e-135 Major facilitator superfamily protein (.1.2) Lus10023994 [exp] 496 / 1e-173 AT2G16980 412 / 2e-141 Major facilitator superfamily protein (.1.2) Lus10025087 [exp] 487 / 9e-170 AT2G16980 405 / 3e-138 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245900 [exp] 646 / 0 AT2G16980 412 / 3e-141 Major facilitator superfamily protein (.1.2) Potri.002G016200 [exp] 622 / 0 AT2G16980 384 / 5e-130 Major facilitator superfamily protein (.1.2) Potri.004G178600 [exp] 535 / 0 AT2G16980 417 / 2e-143 Major facilitator superfamily protein (.1.2) Potri.009G138900 [exp] 513 / 2e-180 AT2G16990 405 / 1e-138 Major facilitator superfamily protein (.1.2) Potri.008G022100 [exp] 279 / 1e-88 AT2G16980 211 / 3e-63 Major facilitator superfamily protein (.1.2) Potri.010G237300 [exp] 272 / 4e-86 AT2G16980 203 / 3e-60 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10004157 pacid=23153323 polypeptide=Lus10004157 locus=Lus10004157.g ID=Lus10004157.BGIv1.0 annot-version=v1.0 ATGGGGAAGCTGATGAATTTGGGACACCTTTTCATGACGATCTACCTCAACAATTTCTCAACGTTCATGGTGATTCCAGCAATCACAGATGTGACAATGG CCGCCGTTTGCCCCGGAGAAGACGAGTGCTCCTTAGCCATTTACCTCTCTGGGTTTCAACAAGCTGTGAGTAAGCGGCCACTGGGTCATTTGTTCATCAC CTACTTCCTTTACAGCTTTGGAATGTTCATGGTGGCGCCTGTTATGACCGATGTCACCATGGCCGCACTTTGTCCCGCCCTACCGGAATGCTCCCTCGCC ATTTACCTCAGTGGATTCCAGCAAGCGGTGATTGGACTGGGAACGTTAGTTATGATGCCATTGGTAGGGAATCTGTCGGATAAATACGGGAGGAAAGCTT TGCTTACTCTTCCAATGACCCTTTCCATTATTCCACTAGCCATATTGGCGTACAGCAGGTCGAGAAACTCCTTCTACGCTTACTATGTGCTTAAGACTCT CACTGCCATGGTTTGTGAAGGAAGTGTTCACTGCCTTGCTCTAGCCTATGTGGCGGACAATGTTCCGCCAGGACGGAGAGCGGCAGCATTTGGGATCCTC TCCGGTATTGGATCGGCGGCATTCGTGTGTGGGAATTTCGCAACTCGTTTCATCTCCACTGCATCGACTTTTCAGGTGGCAACGGCGATGGCGATTATCG GAACAGTGTACATGAGGATTTTCCTGCCGGATGTGGCAGTTGAGGAAAGCCTCACGACTCCGATTCTCTCCAAGGGAAAAGCAAAAATCGTAGACACTTG CCCGAGTCAGATCCCGAAAAAGCAAGAGCAGATCTTCAAATCAAGGCCTTCCCTGAAAGATACGCTGACGATGCTGAGCAGCAGTGTAACCTTCACGCAA GCTGCCATTGTTGCTTTCTTCCTCAGCCTTGCTGATGCTGGCCTTCATGCTTCGCTAACGTATTACCTCAAAGCTGAATTCCACTTCAATAAGGATCAAT TCGCCGATATGATGGTGATTTCTGGTGTTGCTGGGACAGTTTCACAGCTTATTGTGATGCCCATATTAGCTCCGCTTGTAGGAGAAGGAGTTCTGCTTTC AGTTGGACTTTTCTTCTCGTGTGCACATACCTTCCTCTACAGTGTCGCATGGTCCTTCTGGGTCCCTTATGCTGCTTGTTCGCTCTCCATTTTCTTTGTT TTCTCGCAGCCATGTATGCGGACCATTGTATCGAAACAAGTCGGATCATGTGAGCAGGGAAAGGCACAGGGTTGCATTTCAGGGATTTCTTCCTTCGCAA ATGTGATTGCGCCGCTCATCTTCTCTCCATTATCAGCTCTGTTTCTTTCTGATCATGCCCCATTCAATTTCCCCGGTTTCAGCATCATGTGCATCGGATT CGCCATGATGGTAGCTTTCGTTCAGAGTCTGATGATAAGGATTCCGCCTCCCATTTCAGAAGATAGAATGGAGAATTGCAACTATGTTGATGCCTAA
AA sequence Show only first row Show all	>Lus10004157 pacid=23153323 polypeptide=Lus10004157 locus=Lus10004157.g ID=Lus10004157.BGIv1.0 annot-version=v1.0 MGKLMNLGHLFMTIYLNNFSTFMVIPAITDVTMAAVCPGEDECSLAIYLSGFQQAVSKRPLGHLFITYFLYSFGMFMVAPVMTDVTMAALCPALPECSLA IYLSGFQQAVIGLGTLVMMPLVGNLSDKYGRKALLTLPMTLSIIPLAILAYSRSRNSFYAYYVLKTLTAMVCEGSVHCLALAYVADNVPPGRRAAAFGIL SGIGSAAFVCGNFATRFISTASTFQVATAMAIIGTVYMRIFLPDVAVEESLTTPILSKGKAKIVDTCPSQIPKKQEQIFKSRPSLKDTLTMLSSSVTFTQ AAIVAFFLSLADAGLHASLTYYLKAEFHFNKDQFADMMVISGVAGTVSQLIVMPILAPLVGEGVLLSVGLFFSCAHTFLYSVAWSFWVPYAACSLSIFFV FSQPCMRTIVSKQVGSCEQGKAQGCISGISSFANVIAPLIFSPLSALFLSDHAPFNFPGFSIMCIGFAMMVAFVQSLMIRIPPPISEDRMENCNYVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	0	1
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	1.7	0.8883
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	1.7	0.9053
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	2.0	0.8880
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	2.6	0.8609
AT2G16980			Major facilitator superfamily ...		Lus10005626 [exp]	3.2	0.8928
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	3.9	0.8868
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	8.8	0.8699
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	13.7	0.8366
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	14.9	0.8033
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	15.5	0.8049

Compare expression of checked genes

Lus10004157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.