Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06700 512 / 2e-176 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 488 / 1e-167 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 363 / 4e-119 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 336 / 5e-110 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 310 / 3e-99 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 291 / 3e-92 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 256 / 4e-79 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 252 / 3e-77 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 232 / 9e-71 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 223 / 7e-67 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021066 [exp] 881 / 0 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 358 / 3e-117 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 332 / 4e-108 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 328 / 2e-106 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10029126 [exp] 315 / 1e-100 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 288 / 5e-91 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 285 / 2e-89 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 256 / 4e-79 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 251 / 7e-77 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193900 [exp] 546 / 0 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 526 / 0 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 390 / 2e-129 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 361 / 2e-119 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 361 / 2e-119 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 357 / 1e-116 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 319 / 7e-103 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 310 / 2e-99 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 307 / 1e-97 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 252 / 1e-77 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10004159 pacid=23153306 polypeptide=Lus10004159 locus=Lus10004159.g ID=Lus10004159.BGIv1.0 annot-version=v1.0 ATGGGTATGACTGATCCCATCAAGCATCTATCTCCGCCGCCGCCGGACTTCAAGAGCTTACTTTCCCTTTTGAAGACCAAGAGATCTCTGGCGTTCGCCT ATGGCTTCATGTTTGCTTTCGTTGTCTTCACCGTCTTCCTTGCTTTCAACCCTTCTCCCAACTCTTCTTCCCCTTGGTTCTTCTCCAACATCTTCGCCGC CACCCCTCCTCCCCCCGCTGCCGTCGCCGGTCACGGCGACTCGAATCCCTCTGGATCTCAATTCCCTGCTCTTTATTCGTTTCTATTCCCTAACAACTTT TCCTCTTCCTTCTCCACCGACGACAATCGTCAGCCAGAAACCGCCGATGGTTTCTCCACCGTACGGACGGTGGACGTCTCCGACTCCACCGCCGCCGCCG ACAGATCTAACTCTAGTTCCTCTTCTTCTTCTTCTCCGCAATCTCGGGACGGGGAAGTAGAGAAGGAGCAGCATCCATCTGTCGATAGCCAAACGCAAAC CGGTACGGATTCAATTCCAGTTCAGCAGCCGGCAGCTCAGTCGAAGAACTCTTCAATAAGCATCGGAGAAAAGCCTCCGGCTGCAAATCAAACTGCACAG AGTTCGGGTGAAGTTCCTACCTTGAAAAAGCCTGCTGTATCGGCGAATCTGACCGCTGTTACTCCGGCTACAAGCAATGCAACTTCCAGCGGAATAGTGC AGGCGGAGAAGAAACAGAGCAATAACGGCGGCGGCCCTGCGAAACAGACGGTGAAACAGGGGATAGATGCGCTGGTGGAGAGTTTGGAAGGCTGCGATTT CTTCGACGGGGAATGGGTTATGGATGATTCGTACCCGCTTTACAAACCCGGATCATGTTCATTCATCGACGAGCAGTTCAATTGCATCCTCAATGGCCGG CCCGACAAGGACTACCAGAAGTACAAGTGGAATCCCCATGGCTGCACTCTCCCAAGATTGAATGCTGCAAATTTGCTGGATATGTTGAGAGGGAAACGCC TCGTGTTTGTCGGCGATTCGTTGAACAGAAACATGTGGGAATCCATGGTTTGTATGCTGAAAGGAGCTGCCAAAGATCAGAGCAAGGTTTTTGAAGTCAA CGGCCGGCAGCATTTCCGCGGCGAAGCTTCGTATTCCTTCGTGTTCAAAGATTACGATTGCACGGTGGAGTTCTTCGTGACGCCATTCTTGGTTCAAGAA TGGGAGACCAAAGACAAGAAAGGATCGGCGAAGGAAACGCTCCGGCTCGACTTGATCGGGCAGTCTTCGGAGCAGTACAAGGCGGCCGATTTCATTGTGT TCAATACAGGGCATTGGTGGACTCATGAGAAGACTTCCTTAGGTGGGGGGCAATGGAACTCGGGCGGGGCGTGCGACAATGAGGTCGAGCCAATCAAGAA CTCGACTTACCTGACTGAGTACCCGGACAAGATGGTGGTGCTGGAGAAGGTGCTGAGAGGGATGAAAACCTCGGTGAAGTACCTGAACGTGACGAGGATG ACAGATTACCGGAAAGATGGGCACCCGTCGATGTACAGGAAGCAGAAGCTTTCGGCTGAGGAGAAGCAGAAGCCGTTGCAGTACCAGGACTGCAGCCATT GGTGCCTCCCAGGTGTGCCTGATGCTTGGAATGAGGTACTTTACGCTCAAATTCTAGTGAATGAGTACAGGAAGAAGCATTCTGTCCAAAAGAGGCATAG GTTATAA
AA sequence Show only first row Show all	>Lus10004159 pacid=23153306 polypeptide=Lus10004159 locus=Lus10004159.g ID=Lus10004159.BGIv1.0 annot-version=v1.0 MGMTDPIKHLSPPPPDFKSLLSLLKTKRSLAFAYGFMFAFVVFTVFLAFNPSPNSSSPWFFSNIFAATPPPPAAVAGHGDSNPSGSQFPALYSFLFPNNF SSSFSTDDNRQPETADGFSTVRTVDVSDSTAAADRSNSSSSSSSSPQSRDGEVEKEQHPSVDSQTQTGTDSIPVQQPAAQSKNSSISIGEKPPAANQTAQ SSGEVPTLKKPAVSANLTAVTPATSNATSSGIVQAEKKQSNNGGGPAKQTVKQGIDALVESLEGCDFFDGEWVMDDSYPLYKPGSCSFIDEQFNCILNGR PDKDYQKYKWNPHGCTLPRLNAANLLDMLRGKRLVFVGDSLNRNMWESMVCMLKGAAKDQSKVFEVNGRQHFRGEASYSFVFKDYDCTVEFFVTPFLVQE WETKDKKGSAKETLRLDLIGQSSEQYKAADFIVFNTGHWWTHEKTSLGGGQWNSGGACDNEVEPIKNSTYLTEYPDKMVVLEKVLRGMKTSVKYLNVTRM TDYRKDGHPSMYRKQKLSAEEKQKPLQYQDCSHWCLPGVPDAWNEVLYAQILVNEYRKKHSVQKRHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	0	1
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	1.4	0.9395
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	2.0	0.9201
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	3.0	0.9147
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	3.3	0.8838
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	7.2	0.8835
AT2G22590			UDP-Glycosyltransferase superf...		Lus10012726 [exp]	9.9	0.8691
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	10.0	0.9115
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	10.4	0.8965
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	10.6	0.8821
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	10.7	0.9087

Compare expression of checked genes

Lus10004159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.