Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06710 246 / 2e-79 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 211 / 2e-66 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G16780 205 / 4e-64 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT2G22800 201 / 8e-63 HD HAT9 Homeobox-leucine zipper protein family (.1) AT3G60390 196 / 3e-60 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 195 / 3e-60 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 194 / 6e-60 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 195 / 1e-59 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G01430 154 / 2e-44 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 140 / 8e-40 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021064 [exp] 395 / 3e-139 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 352 / 2e-120 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 352 / 4e-120 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 223 / 2e-70 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 221 / 2e-69 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 209 / 8e-65 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 206 / 5e-64 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10011569 [exp] 159 / 6e-47 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10019256 [exp] 157 / 5e-46 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193700 [exp] 340 / 4e-116 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 337 / 1e-114 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 282 / 8e-93 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 282 / 8e-93 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 246 / 4e-81 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 222 / 8e-71 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.005G147100 [exp] 218 / 3e-69 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.001G155100 [exp] 214 / 2e-67 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.002G113400 [exp] 212 / 8e-67 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.003G079800 [exp] 209 / 2e-65 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10004161 pacid=23153328 polypeptide=Lus10004161 locus=Lus10004161.g ID=Lus10004161.BGIv1.0 annot-version=v1.0 ATGGAGCTAGCTCTGAGCTTGGGCGATAATTCTAAACCCTTCAAGTTCCTCGACAAATCGACCCCCAGAACCTCCCCTGTCGATCACCACCTCGGTTTCT GCATCGGCGGTGGTTCCGGAGCGCCAGCTCCTCCTCCGACTACTACTTCCCCCGCCGCCGCAAGATCGCAAGAGATCATAAACAGTAGTATTAATGATCG TCGAGATATCGCCGTTGGAAGCTCTCGTGTTTCTTCTGCTGGTCGTCCTTTCCAGCTCGATCTCCTTCCTTTCTCCCCCGTCACCGGCAAGAGACCGTCG CCGCCGGAGACTCGATTCCCCTGGCTTGTCACTGAACCAGCTCTGGTGACGAGTTCGGAGCATGGGGTTGGAGACGGGTCAAGACGGTTCGATGTGAACC GTTTGTCGGCTGAGGAAGGAGAGGACGTCGACGGCGCGTCTCTGTCGTCTCCCAACAGCGCCGCGTCGTCGTTTCAGATGGAGTTCGGGATCGGCCTGGG GAGCAAGAGGGATTTGGAAGGTGAACTAGCAGGGTCAAGAGCAAGCGACGATGATGAAAACGGGTCGACTCGGAAGAAGCTCCGACTCTCGAAAGACCAA TCTGCTTTTCTCGAGGAAAGCTTCAAAGAACACAGCACTCTCAACCCCAAGCAAAAGCAAGCGTTGGCTAAGCAGTTGAATCTACGGCCAAGGCAGGTTG AAGTGTGGTTTCAGAACAGAAGGGCCAGGACAAAGCTTAAGCAAACAGAGGTGGACTGCGAGTATTTAAAGAGGTGCTGCGAGACACTGACAGAAGAGAA CAGGAGGTTACAAAAGGAACTGCAGGAATTAAGAGCTCTGAAGACCAATTCTCAGCCTTTCTACATGCAGCCCCCTGCTACTACTCTCACCATGTGCCCT TCCTGTGAGCGCGTCGCCACCACCACCGGCGGCAACAAACCAACCACCAAGCCATCATCATCAACAGCACTGTCATTAGGTAACAGTAATAATGGCAGGA CGGTGAACCCATTCAGTGATGTGCAGCTACAAAGGTCTCAGCAGAATCAACCTAACCAGCCTGCTGCTTCATGA
AA sequence Show only first row Show all	>Lus10004161 pacid=23153328 polypeptide=Lus10004161 locus=Lus10004161.g ID=Lus10004161.BGIv1.0 annot-version=v1.0 MELALSLGDNSKPFKFLDKSTPRTSPVDHHLGFCIGGGSGAPAPPPTTTSPAAARSQEIINSSINDRRDIAVGSSRVSSAGRPFQLDLLPFSPVTGKRPS PPETRFPWLVTEPALVTSSEHGVGDGSRRFDVNRLSAEEGEDVDGASLSSPNSAASSFQMEFGIGLGSKRDLEGELAGSRASDDDENGSTRKKLRLSKDQ SAFLEESFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNSQPFYMQPPATTLTMCP SCERVATTTGGNKPTTKPSSSTALSLGNSNNGRTVNPFSDVQLQRSQQNQPNQPAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	3.2	0.9338
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	4.5	0.9292
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	8.5	0.9389
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	9.4	0.9115
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	12.4	0.9148
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	16.5	0.9115
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	19.1	0.9310
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	22.3	0.9235
AT3G07580			unknown protein		Lus10016076 [exp]	24.9	0.9277
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	25.5	0.9101

Compare expression of checked genes

Lus10004161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.