Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 439 / 2e-155 ATPA2 peroxidase 2 (.1) AT5G06730 427 / 1e-150 Peroxidase superfamily protein (.1) AT5G19880 352 / 2e-121 Peroxidase superfamily protein (.1) AT2G38380 352 / 4e-121 Peroxidase superfamily protein (.1) AT2G38390 338 / 2e-115 Peroxidase superfamily protein (.1) AT3G32980 333 / 8e-114 Peroxidase superfamily protein (.1) AT3G49110 333 / 1e-113 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 331 / 7e-113 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT3G49120 330 / 3e-112 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT5G05340 327 / 8e-112 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008168 [exp] 389 / 1e-135 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027989 [exp] 366 / 2e-126 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008173 [exp] 366 / 2e-126 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027984 [exp] 363 / 3e-125 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008167 [exp] 360 / 8e-124 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 324 / 4e-110 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10026748 [exp] 320 / 7e-109 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 324 / 9e-109 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10027983 [exp] 318 / 2e-107 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058200 [exp] 459 / 2e-163 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214700 [exp] 413 / 3e-145 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 398 / 3e-139 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214900 [exp] 388 / 2e-135 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 379 / 6e-132 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011500 [exp] 371 / 3e-129 AT5G06720 376 / 6e-131 peroxidase 2 (.1) Potri.001G012901 [exp] 370 / 3e-128 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 367 / 2e-127 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 366 / 8e-127 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 365 / 3e-126 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10004163 pacid=23153333 polypeptide=Lus10004163 locus=Lus10004163.g ID=Lus10004163.BGIv1.0 annot-version=v1.0 ATGAGGTTTGCTCCAATGGTGACAATGTTTTCCGTGACGATAATTGGACTACTCTTCCTCGGCCAATCGAATGCTCAATTAACCTCGACGTTCTACGCCA CCACCTGTCCCAACGTCTCTAACGTCGTCAGCAACGTCATCCAGCAAGCTCTCCAGTCCGACGCCAGGATCGCCGCCAGCCTCATCCGCCTCCATTTCCA CGATTGCTTCGTCCAGGGGTGTGACGGGTCGATCTTGCTGGACGACAACTCGACGGCGAACATCCAGAGCGAGAAGAACGCAGGACCGAACGCCAACTCG GCGAGAGGGTTCCCGGTGGTGGACAGCATCAAGTCGGCCGTGGAAAACGTGTGCCCTGGTGTTGTGTCCTGCGCGGACATCCTTGCTCTGGCCGCCGAGG CTTCCGTTGTGCAGTCCGGTGGGCCGTCGTGGAGCGTGCTGTTGGGGAGAAGGGACAGTCGAACTGCAAATCAAGGAGGAGCCAACGCTTCGATTCCGGC TCCTTTCGATAACCTTGCGAATCTCACTTCGAAGTTCAGTAACGTTGGCCTTAACACCAACGATCTTGTTGCATTATCAGGGGCCCACACGTTCGGCCGG GCACAGTGCCGTACATTCGTGAACCGGCTCTACAACTTCACCGGGTCGGGACCTGACCCGACTCTGAGCTCGTCGTATGCGACCACCCTGCAGCAGACGT GCCCACAAAACGGCAACGGAGCGGCATTGGCGAACCTCGATCCGACAACTTCCGACACTTTCGACAACAACTACTACTCGAACCTCCAGAACAACCAGGG ATTGTTGCAGTCTGACCAGGCGCTGACCGGGACTTCAACGATGGCCCTGGTCAACGCCTTCAGCAACAACCAAACAGCTTTCTTCCAGAGTTTTGTACAG TCGATGGTCAACATGGGTAATATAAGCCCGTTGACCGGGAGCAGTGGCGAGATTAGAGGGGATTGTAAGATGATTAATTAG
AA sequence Show only first row Show all	>Lus10004163 pacid=23153333 polypeptide=Lus10004163 locus=Lus10004163.g ID=Lus10004163.BGIv1.0 annot-version=v1.0 MRFAPMVTMFSVTIIGLLFLGQSNAQLTSTFYATTCPNVSNVVSNVIQQALQSDARIAASLIRLHFHDCFVQGCDGSILLDDNSTANIQSEKNAGPNANS ARGFPVVDSIKSAVENVCPGVVSCADILALAAEASVVQSGGPSWSVLLGRRDSRTANQGGANASIPAPFDNLANLTSKFSNVGLNTNDLVALSGAHTFGR AQCRTFVNRLYNFTGSGPDPTLSSSYATTLQQTCPQNGNGAALANLDPTTSDTFDNNYYSNLQNNQGLLQSDQALTGTSTMALVNAFSNNQTAFFQSFVQ SMVNMGNISPLTGSSGEIRGDCKMIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	0	1
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	1.7	0.9364
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	2.0	0.9457
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	4.0	0.9399
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	6.0	0.9353
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	6.7	0.9337
AT5G65495			unknown protein		Lus10002656 [exp]	11.0	0.9336
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10042493 [exp]	11.0	0.9048
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	12.4	0.9237
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10027802 [exp]	12.4	0.8992
AT4G27435			Protein of unknown function (D...		Lus10032663 [exp]	13.2	0.8958

Compare expression of checked genes

Lus10004163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.