Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42040 72 / 6e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021062 [exp] 219 / 1e-72 AT2G42040 80 / 6e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058100 [exp] 81 / 7e-18 AT2G42040 91 / 7e-21 unknown protein Potri.006G193300 [exp] 77 / 1e-16 AT2G42040 91 / 1e-20 unknown protein Potri.016G058000 [exp] 77 / 1e-16 AT2G42040 92 / 2e-21 unknown protein Potri.006G193500 [exp] 76 / 3e-16 AT2G42040 82 / 1e-17 unknown protein Potri.016G059400 [exp] 48 / 1e-06 AT2G42040 50 / 7e-07 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC
Representative CDS sequence Show only first row Show all	>Lus10004164 pacid=23153320 polypeptide=Lus10004164 locus=Lus10004164.g ID=Lus10004164.BGIv1.0 annot-version=v1.0 ATGGGACAGTTACAGTCACCAATTTGCAGCCCATCTGGTAATGATATTGGAGTAACGTGGTCGTCGTCGTCGAGGAAGAAGAGCAGCTGGTTTTCACCGT CGTCATTATTAGACAACGGGCTAGACAGTAGTAGTGGTAATAAACGAGATGATGTGAAGAAACCACCGTTGAACAAGAAGAGAGCAGCAGGAGGAGGAGG AGGAAGTAGTAGTAATAGTACTAGTAGTAGAGTGATGGAAGCAGGGTCGAGGTGCAGCCGAGTCAACGGACGGGGATGGAGGTGCTCTCAGCCTACTTTA GTCGGTTACGCTCTCTGCGAGCATCACTTGGGTAAAGCCCGCATTCGAACCATCTCCACCACCACCACCTCCACCATTCGGCAATTGGGCTGCACCACTG GTTCAACCCATCCAACGAAACTTCCATCCCCATCATCGGATAATGTTGATCGAACAGAACAGAAACAGATGATGCCAAGTAATGTTGGTGATGCTGAAGA AGAGGACGACGATAATTACCAGAAGAAGTCGAAGCTCGGTTCGGTTAAGGCTAGATCAATAAGCAGCTTGCTTGACCAAACTGATCATAATGCTGTTTCT TCGCTACTTCTGCTGCCTCATCATGCTCATAAACCATCATCTTGA
AA sequence Show only first row Show all	>Lus10004164 pacid=23153320 polypeptide=Lus10004164 locus=Lus10004164.g ID=Lus10004164.BGIv1.0 annot-version=v1.0 MGQLQSPICSPSGNDIGVTWSSSSRKKSSWFSPSSLLDNGLDSSSGNKRDDVKKPPLNKKRAAGGGGGSSSNSTSSRVMEAGSRCSRVNGRGWRCSQPTL VGYALCEHHLGKARIRTISTTTTSTIRQLGCTTGSTHPTKLPSPSSDNVDRTEQKQMMPSNVGDAEEEDDDNYQKKSKLGSVKARSISSLLDQTDHNAVS SLLLLPHHAHKPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42040			unknown protein		Lus10004164 [exp]	0	1
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	7.9	0.8390
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	9.3	0.8362
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	11.0	0.8550
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	16.4	0.8337
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	21.2	0.8231
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	24.4	0.8162
AT3G57450			unknown protein		Lus10018070 [exp]	27.3	0.7862
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	30.8	0.7862
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	33.7	0.7879
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	36.7	0.7899

Compare expression of checked genes

Lus10004164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.