Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27660 92 / 4e-20 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 76 / 1e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 74 / 5e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 74 / 7e-15 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 73 / 1e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 67 / 2e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G42060 55 / 2e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 54 / 4e-08 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 51 / 3e-07 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 50 / 1e-06 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016256 [exp] 276 / 2e-91 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10036411 [exp] 70 / 5e-13 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003919 [exp] 58 / 1e-09 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 57 / 1e-08 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 47 / 9e-06 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 0 / 1 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057900 [exp] 200 / 2e-60 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 92 / 4e-21 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 88 / 2e-19 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 70 / 2e-13 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 54 / 4e-08 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044432 [exp] 51 / 5e-07 AT5G45730 135 / 7e-35 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 45 / 5e-05 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 45 / 6e-05 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 43 / 0.0002 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 43 / 0.0003 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10004165 pacid=23153310 polypeptide=Lus10004165 locus=Lus10004165.g ID=Lus10004165.BGIv1.0 annot-version=v1.0 ATGGATGCAAAAGAACAGAGTCAGCATTTCACCCACCAGCATCCCCTGAACCCAACCGTTTCGCCGGGAAACATAACCTGCAACGGCTGCACCTTCGAAA TCTCGTCGGGAAACGATTGCTACTCTTGCAAAACTTGCAATTCGTTCTCTTTACATAAGCTCTGTTTCCACTTGCCCAGAACCACCGATCACCCTGCTCA TCCTGATGAAAAGCTCAACCTTTCAGTAATACAATCACAGTCACCTACCATGAAATGCAGAGCTTGTACTAAGATCATCACCGCCGGATTATACTACGGC GCCGGAGGAGGAGGAGGAATTTGCTATCATAACCTCTGTTTAACTCTACCGCTCTCTGTTACCGTCGCCGGTCATCCTCACCCGCTAAAGATCCAATTTT CTCCGCCGTACGACTTAAAGACCAAATTTTCTCCGCCGTACCACTTCAGCTGCGACCTCTGCGCGAAACCCAGTTACAAAGGGTGGCTGTACCGCTGCCG GTTCTGCGAATTCGACGCCCACATCGCCTGCGCGATTTCCCACAAAACTTCCGACCCGGCCGCCCTGCCGGAGAATCTAACCCGGCAGATTTCCAATTCC GCCCGGAACGGTCAGGAGATTCTGAAATTGCTCCAGCAGAGACTAGGAATTTATATTTCGGGTGAAAAATCGACGGGGCTGGCGGCTGCCGAAGATCGGA AGGAATCGGCGGCCTCTTCTCCTCCTCGTCCTCCTTCTCCTCCGCGGACGCCCCCATCGAAATCGCCGTTTTCGTCGGTGTGGGTGGCGGACATCCCTAG CTATCAATTCAGCGACCTGTGCTTCTCGATCGACCTTCAGAAGTCTTTCTCCGGACCAGACGGGGAGAGGAAAGTGGTGGTGGGGCCGGCGCCGGCGCCG CCGAGTACTAAAAATTGGTGCGATTCGCATGCTCTGCTACAAAGCTCGACCAACGGGAAGATGAATCACAAGGAAGAGAAGAAAGTACTAAACGCTTACG GGATGAAGAAGAAGAATGCAATCCACGAATGCGATGAAGAAACAGTAAGTAATTGA
AA sequence Show only first row Show all	>Lus10004165 pacid=23153310 polypeptide=Lus10004165 locus=Lus10004165.g ID=Lus10004165.BGIv1.0 annot-version=v1.0 MDAKEQSQHFTHQHPLNPTVSPGNITCNGCTFEISSGNDCYSCKTCNSFSLHKLCFHLPRTTDHPAHPDEKLNLSVIQSQSPTMKCRACTKIITAGLYYG AGGGGGICYHNLCLTLPLSVTVAGHPHPLKIQFSPPYDLKTKFSPPYHFSCDLCAKPSYKGWLYRCRFCEFDAHIACAISHKTSDPAALPENLTRQISNS ARNGQEILKLLQQRLGIYISGEKSTGLAAAEDRKESAASSPPRPPSPPRTPPSKSPFSSVWVADIPSYQFSDLCFSIDLQKSFSGPDGERKVVVGPAPAP PSTKNWCDSHALLQSSTNGKMNHKEEKKVLNAYGMKKKNAIHECDEETVSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10004165 [exp]	0	1
					Lus10038295 [exp]	3.7	0.9587
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	5.7	0.9572
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	7.1	0.9544
					Lus10002317 [exp]	8.8	0.9449
					Lus10003755 [exp]	10.4	0.9503
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	11.8	0.9484
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	12.0	0.9375
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	12.4	0.9235
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	13.0	0.9257
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	15.2	0.9416

Compare expression of checked genes

Lus10004165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.