Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 656 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 320 / 4e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 317 / 3e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 312 / 4e-97 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 308 / 1e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 306 / 5e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45420 306 / 9e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 305 / 2e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 305 / 4e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 302 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021060 [exp] 1102 / 0 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 669 / 0 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 667 / 0 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 393 / 1e-127 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 393 / 8e-127 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 362 / 6e-116 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 350 / 3e-111 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 344 / 4e-109 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 340 / 1e-107 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193000 [exp] 736 / 0 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 727 / 0 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 395 / 7e-129 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 387 / 9e-126 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 371 / 2e-119 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 366 / 1e-117 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 353 / 2e-112 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 349 / 7e-111 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 347 / 1e-110 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 347 / 4e-110 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004166 pacid=23153322 polypeptide=Lus10004166 locus=Lus10004166.g ID=Lus10004166.BGIv1.0 annot-version=v1.0 ATGTCGAAGTACAGCGTTCATCCCTCTCTGTTCCTCACAATCTTCTTCTTCTTCTTCTTCATAGCTAATTTCTCCCAAGTGGGTTGCTTCAGCTTCAACT ACACATATTTTGACGACACAAACAGAGACCATTTCATCCTACAAAAATCCAACGTGGCAGCGGATGCCATCCAGGTCACCGGAGACTACAGCGGCGCCCC AATCACAAACCTGCACGGCCGGATTCTCTTCAACCGGCCGTTTCGTCTACTCACTTTCGACACCACATTCGTCCTCAGGATCGTTCCCCGGCCTCTGCCT CAGTCGATCGCAGGGGAAGGCCTGGCATTCGTGCTCACCGGAGACCCCAACATACCAGAAGACAGTTCAGGCCAATGGCTCGGAATCGTAAACTCGAAAA CCAACGGATCGGCACAGATTGTAGCGGTGGAATTCGACACCAGGAAGAGTTACCCGGAAGATCTGGATGATAATCATGTGGGAATTGATTTGGGCTCTGT TTACTCTGTTCAACAGGTTTCCCTTTCAGGAATCGACATCAACTTAGCGTCAGATACAGATATAACCGTCAGGATTCAGTATGACGGCGTTAATTTGACA GTTTTCGTTGGGAACGACAGCAGCCTTGTAATTACTCGGCCGATTGATCTGTCTTTGTATCTTCCCGACGAGGTTTACGTTGGATTTACAGGGTCTACTA GTGAATACACTCAGCTTAACTGCATCAGGTCATGGGAATTCAATGGATCGGAAATTTCGGAAGGGAAAAAGAGATGGGTTTGGATTGTTGTGTCAGTTGT ATCTGTAATTGTGATTCTCGTATTTGTTTCTGGTTTAGTCTACTGGAAAATGAGATATGGAGATGACAAATTCGACTTCGACCCTTATCCGACAATCGAG GAGGCAATTCAGGGCTCTTCGACAGCTCCAAGAAAATTCAAGCTGAAGGAGTTGAGGAAGGCTACAGGGAATTTCAATTCGAAGAACAAGCTTGGGAAAG GAGGATTCGGTACTGTTTACAAAGGAATTATCGAAAATAAGGAGATTGCGGTGAAGAAAGTGTCGAAGAAGACGACTCAGGGGAAGCAGGAGTTCATATC GGAGGTCATCACGATCGGGAATCTTCACCACCGGAATCTCGTGAAGCTAATCGGATGGGCTTACGAGAGGAAAGAGTATTTATTGGTTTACGAGTACATG CCCAACGGAAGCCTGGACCATTTCGTTTTCCACGGCGACAAGTTTGAAACAGGGAATAATAACGGACCGTCGTTGAATTTGATGAGCTGGGCCGTCAGGT TGCGGGTTATTTCGGGTGTAGCTCATGCGGTGGAGTATCTACACAACGGGTGCGAAAAGAAGGTTCTCCACCGGGATATCAAGTCCAGCAACATAATGCT GGACTCCGGATTCAACGCCAAGCTAGGCGATTTCGGTCTGGCCAGGACTTATGTCCAATCCGACCAGACCCACCACTCCACTAAGGAAGTGGCGGGGACG CCTGGCTACATGGCTCCCGAAATTTTCCTAACGGGAAGGGCCACGGAGGAGACTGATGTTTACGCTTTCGGAATCTTGCTCCTCGAAGTTGCCTGCGGGA GGAAACCTGGCGGATGGATGGATCAGGATGATTACGGGAGCAACATCGTGAAGTGGGTTTGGGAGCTTTACAGGATGGAGAATCTGATGAATGCTGCCGA TGCTAGATTGAATGGAGATTTCAACACGGAGGAAATCGCATGTGTGTTGATTTCAGGGCTGGCTTGCTGCCATCCGAACCCGAATAACAGGCCTTCCATG AAATTTGTCCTCAAGGTTTTGGCAGGGGAAGCTGATCCCCCCGAGCTTCCCCTTGAAAGGCCTGCTTTCGTGTGGCCTCCTTTGCCTTCGTCTTTCAAAG ATAAGAATTACGAAGGAAGTGAGGTTACTCTATTTACCGAACTTTCAGGTAGATAA
AA sequence Show only first row Show all	>Lus10004166 pacid=23153322 polypeptide=Lus10004166 locus=Lus10004166.g ID=Lus10004166.BGIv1.0 annot-version=v1.0 MSKYSVHPSLFLTIFFFFFFIANFSQVGCFSFNYTYFDDTNRDHFILQKSNVAADAIQVTGDYSGAPITNLHGRILFNRPFRLLTFDTTFVLRIVPRPLP QSIAGEGLAFVLTGDPNIPEDSSGQWLGIVNSKTNGSAQIVAVEFDTRKSYPEDLDDNHVGIDLGSVYSVQQVSLSGIDINLASDTDITVRIQYDGVNLT VFVGNDSSLVITRPIDLSLYLPDEVYVGFTGSTSEYTQLNCIRSWEFNGSEISEGKKRWVWIVVSVVSVIVILVFVSGLVYWKMRYGDDKFDFDPYPTIE EAIQGSSTAPRKFKLKELRKATGNFNSKNKLGKGGFGTVYKGIIENKEIAVKKVSKKTTQGKQEFISEVITIGNLHHRNLVKLIGWAYERKEYLLVYEYM PNGSLDHFVFHGDKFETGNNNGPSLNLMSWAVRLRVISGVAHAVEYLHNGCEKKVLHRDIKSSNIMLDSGFNAKLGDFGLARTYVQSDQTHHSTKEVAGT PGYMAPEIFLTGRATEETDVYAFGILLLEVACGRKPGGWMDQDDYGSNIVKWVWELYRMENLMNAADARLNGDFNTEEIACVLISGLACCHPNPNNRPSM KFVLKVLAGEADPPELPLERPAFVWPPLPSSFKDKNYEGSEVTLFTELSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10004166 [exp]	0	1
AT4G22030			F-box family protein with a do...		Lus10020029 [exp]	9.6	0.9530
AT4G04480			unknown protein		Lus10020028 [exp]	17.1	0.9465
AT5G44440			FAD-binding Berberine family p...		Lus10012641 [exp]	18.8	0.9359
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	26.3	0.9398
AT5G42500			Disease resistance-responsive ...		Lus10032939 [exp]	35.1	0.8939
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	36.0	0.9357
					Lus10016839 [exp]	40.7	0.9287
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	47.9	0.9240
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	49.0	0.9186
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	56.2	0.9065

Compare expression of checked genes

Lus10004166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.