Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41500 615 / 0 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G05720 251 / 1e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 160 / 1e-44 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 137 / 1e-34 MAC3B MOS4-associated complex 3B (.1.2.3) AT4G02730 132 / 4e-34 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 127 / 2e-31 PRL1 pleiotropic regulatory locus 1 (.1) AT5G25150 126 / 2e-30 TAF5 TBP-associated factor 5 (.1) AT4G29830 121 / 2e-30 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G04510 119 / 1e-28 MAC3A MOS4-associated complex 3A (.1.2) AT3G16650 117 / 6e-28 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021059 [exp] 848 / 0 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 155 / 1e-42 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 155 / 2e-42 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 147 / 1e-39 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 146 / 4e-39 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 126 / 3e-30 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10023728 [exp] 123 / 2e-29 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10014477 [exp] 120 / 1e-28 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10037500 [exp] 117 / 5e-28 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045800 [exp] 692 / 0 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.016G042250 [exp] 387 / 3e-128 AT2G41500 327 / 8e-105 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 155 / 9e-43 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 145 / 6e-39 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 144 / 2e-38 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 129 / 6e-32 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.010G066000 [exp] 127 / 4e-31 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.018G020200 [exp] 126 / 2e-30 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 123 / 2e-29 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 120 / 6e-29 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08799 [flax] [poplar] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Lus10004167 pacid=23153335 polypeptide=Lus10004167 locus=Lus10004167.g ID=Lus10004167.BGIv1.0 annot-version=v1.0 ATGACAGCTGAGGATGAGAATCTTCCATCAACAACTTTACCAGCTGAATCTTCAGCTTCTGTCCCTGAAGATCACACTATGGTTGATGTCATTCCTGTTC AACCAGTTATCCCACCAGTGGCTCCGTTCGTGCCTGCTATGGCTCCACTGCCTCCCGTTCCTCGCCCATTAGCACCTCTTCCTGCCCGTCTGCCTGTACT TAAGCCTCCGACACCCCAGGATGGCGAGGCAGGGACGAGTGAGTCGGATTCCGAAGATGACGACTCTAGTCTTTCTGGTACCGGGTTAGCTTATGAGATT TCAGAAGAGAGCCGACTTGTTCGAGAGAGGCAGCAAAAGGCGATTCAGGAGCTCATGATGAAGCGTCGTGCTGCTGCTTTGGCTGTTCCTACCAATGACA TGGCTGTTCGTGCCCGTCTACGTAGGCTTGGTGAACCGATAACGCTTTTCGGAGAGAGGGAGATGGAAAGGCGAGATAGGTTGCGCATGCTTATGGCAAA GCTGGATTCCGAAGGGCAGTTGGAAAAGTTGATGAAAGCTCACGAGGAAGAGGAGGCTGCTGCTACTACAACATCGTATGATGCCGAGGAAGAAATGGTT GAGTACCCCTTTTACACTGAAGGGTCCAGGGAACTATTGAATGCTAGAGTTAGCATTCTCAAATATTCAGTAGTAAGGGCAGCCTTGCGGCTTCAGCGTG CACGACGAAAACGTGATGATCCAGATGAAGATGAAGATGCAGAGATCAATTGGGCTTTGGAGCAAGCACGAAATCTGGCTCTTGACTGCAGTGAGGTTGG AGATGATCGGCCTCTCTCTGGTTGCTCCTTTTCCAAAGACGGAGAGTTTCTTGCGACTTGTTCATTAAAGGGAGTTGCAAAAGTGTTGAAATCGCCGAAC TTAACCGAAGTTACCGCCTTGAAGGGACACAAAGAACGCCTAACAGATGTGTGTTTTTCTCCTGTGAACAACTGTTTGGCAACTGCGTCTGCTGATCGAA CTGCGAAATTGTGGGACACTGATGGAACTCTTCTCCGGACATTCGAGGGCCACTTGGATCGTCTTGCACGCATAGCCTTTCATCCTTCTGGGAAGTACAT TGGCACCACAAGCTTTGACAAGACATGGAGATTATGGGACGTCGACACTGGAGTGGAATTACTCCTCCAAGAAGGCCATAGCAGGAGCGTCTACGGGATC GCCTTCCACCCTGACGGTTCGCTGGTGGGATCTTGTGGACTGGATGCACTTTCGCGTGTGTGGGATCTTCGTACCGGGAGAAGTATTATGGCCTTGGAAG GACACGTCAAGCCGGTTCTTGGTATCAGCTTTTCTCCTAATGGATATCATCTAGCCACAGGTGGTGAAGATAATACTTGTCGGATATGGGATTTGAGGAA GAAAAAATCCTTGTATGTCATCCCTGCGCATTCAAACCTCGTATCCCATGTCAAATACGAGCCTCAAGAAGGGTATTATTTGGTTACTGCATCCTATGAC ACGACTGCGAAGGTTTGGTCAGGCAAAGATTTCAAGCCTGTTAAAACATTGTCAGGGCACGAGTCCAAAGTCGCGTCTTTGGATATCACTCCAGATGGAC GATACATTGCAACAGCGTCACATGATCGAACTATCAAGCTGTGGTCCAGTAAGAGCAATGAGAAGGAGAGTATGGATGTTGACAACGAGGAGGGTATGGA TGTTGACAAAGCTTGCTGA
AA sequence Show only first row Show all	>Lus10004167 pacid=23153335 polypeptide=Lus10004167 locus=Lus10004167.g ID=Lus10004167.BGIv1.0 annot-version=v1.0 MTAEDENLPSTTLPAESSASVPEDHTMVDVIPVQPVIPPVAPFVPAMAPLPPVPRPLAPLPARLPVLKPPTPQDGEAGTSESDSEDDDSSLSGTGLAYEI SEESRLVRERQQKAIQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMLMAKLDSEGQLEKLMKAHEEEEAAATTTSYDAEEEMV EYPFYTEGSRELLNARVSILKYSVVRAALRLQRARRKRDDPDEDEDAEINWALEQARNLALDCSEVGDDRPLSGCSFSKDGEFLATCSLKGVAKVLKSPN LTEVTALKGHKERLTDVCFSPVNNCLATASADRTAKLWDTDGTLLRTFEGHLDRLARIAFHPSGKYIGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGI AFHPDGSLVGSCGLDALSRVWDLRTGRSIMALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLVSHVKYEPQEGYYLVTASYD TTAKVWSGKDFKPVKTLSGHESKVASLDITPDGRYIATASHDRTIKLWSSKSNEKESMDVDNEEGMDVDKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	0	1
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	2.0	0.8879
AT3G22430			unknown protein		Lus10041204 [exp]	2.4	0.8873
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	2.8	0.9009
AT2G44020			Mitochondrial transcription te...		Lus10004535 [exp]	4.2	0.8117
AT3G22430			unknown protein		Lus10041205 [exp]	4.5	0.8771
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	6.6	0.7763
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	8.9	0.8294
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	12.6	0.8339
AT5G44150			unknown protein		Lus10018632 [exp]	13.4	0.8210
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	13.8	0.7796

Compare expression of checked genes

Lus10004167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.