Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12100 466 / 7e-164 Cation efflux family protein (.1.2) AT2G04620 67 / 1e-11 Cation efflux family protein (.1) AT2G46800 49 / 5e-06 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021058 [exp] 669 / 0 AT3G12100 461 / 1e-162 Cation efflux family protein (.1.2) Lus10004102 [exp] 61 / 9e-10 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 61 / 1e-09 AT2G04620 783 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045200 [exp] 526 / 0 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2) Potri.005G110300 [exp] 63 / 2e-10 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.002G180100 [exp] 42 / 0.001 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10004168 pacid=23153337 polypeptide=Lus10004168 locus=Lus10004168.g ID=Lus10004168.BGIv1.0 annot-version=v1.0 ATGAGGAAAAGCGATTCCTTCAAGCATCCCTGGAGCGACGACTTCGATCGGCGGTACGCTTACTCACGCCAGTCTTCGTTCCGACAACAGCAAGAACTGC CGCGAACTCCGGTTTCGTTTCTCCCCAATGATTCGTCGGCGACGCCTTTCCTCTCCCGGACTTCCTCGAGCATCGATATGCCACCAGAAGTCTATAACTA TTCCTTCAATTACCAAAACGATGGCGGTTTTTCCGACTCTAAGGACCTGGCGGCCGGCGGCAGGAGTGAGAATTTGCCGGTGGTTTCCGTGTTTAGGGCT GTAAGGTACGGGAGCAGGCAAATGAGGAGGCTATGCTTGATGATATTCCTTAATGTTGCGTATTCTACTACTGAGTTCGCGATTGGCCTGTTTAGTGGCC GTATAGGTTTGGTATCGGATGCATTTCATTTGACGTTTGGCTGTGGTCTCCTTTCATTTTCCTTGTTTGCTATGGCTGCTTCACGGAGAAAGCCTGATCA TGTTTACACTTATGGGTACAAGAGGCTTGAAGTATTAGCTGCTTTTACTAATGCTCTGTTTCTGCTTTTCCTGTCATTCTCGTTAGCTGTGGAAGCTCTG CATGCATTCATACAAGATGAATCCGAGCATAAGCATTATTTGATTGTTTCGGCAGTGACAAACTTGGCGGTGAATCTTATTGGTGTCTGGTTCTTCAGGA ACTATGCTAGAGTGAATATTGTCTACAGAAATGCTGAAGACATGAATTACCATTCAGTTTGCTTGCATGTCCTTGCAGATTCCATCCGCAGGTCTGATCT TTACTCCGTTGCCATCGGTTTGGTGCTAGCATCATGGCTCTTGTCGCTTGGGTATTTCACTTGTCCCCTCCTCCCGCCAAACATCACCTTGAACCTTTCA TTGCTCTTGTCACTAACCTTTTTCTCGTCCTATGCCAGAGTTAAGAATGCAGAGGTTCTTTGCTTGGGGCTCGTTTCCGTTACAGTCTTTATGCTTGTCA TGCCTCTTTTCAAAGCAGCCGGTGGTGTCTTGCTTCAAACGGCACCACCAAGCATTCCACCTTCAGCATTGAGCAAATGCTCAAGACAGATTTCTGCTTG TGAAGATATTTCCCAAGTATCTGAAGCGCGTTTCTGGGAACTAGTTCCAGGCCACGCAGTAGGTTCCATCTCATTGCAGGTGAAGAATGGAACAGATGAT CGGCAGGTACTACAGTTTGTGCACGGTCTGTACCATGACTTAGGGGTACTGGATCTCACGGTGCAGACTGATCAGGACTGA
AA sequence Show only first row Show all	>Lus10004168 pacid=23153337 polypeptide=Lus10004168 locus=Lus10004168.g ID=Lus10004168.BGIv1.0 annot-version=v1.0 MRKSDSFKHPWSDDFDRRYAYSRQSSFRQQQELPRTPVSFLPNDSSATPFLSRTSSSIDMPPEVYNYSFNYQNDGGFSDSKDLAAGGRSENLPVVSVFRA VRYGSRQMRRLCLMIFLNVAYSTTEFAIGLFSGRIGLVSDAFHLTFGCGLLSFSLFAMAASRRKPDHVYTYGYKRLEVLAAFTNALFLLFLSFSLAVEAL HAFIQDESEHKHYLIVSAVTNLAVNLIGVWFFRNYARVNIVYRNAEDMNYHSVCLHVLADSIRRSDLYSVAIGLVLASWLLSLGYFTCPLLPPNITLNLS LLLSLTFFSSYARVKNAEVLCLGLVSVTVFMLVMPLFKAAGGVLLQTAPPSIPPSALSKCSRQISACEDISQVSEARFWELVPGHAVGSISLQVKNGTDD RQVLQFVHGLYHDLGVLDLTVQTDQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	0	1
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	1.0	0.9397
AT3G03560			unknown protein		Lus10020297 [exp]	2.0	0.9120
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	6.2	0.9167
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	6.5	0.9108
AT3G03560			unknown protein		Lus10005694 [exp]	6.5	0.8855
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	7.5	0.9086
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	11.0	0.9195
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	11.5	0.8899
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	12.0	0.9083
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	12.4	0.9098

Compare expression of checked genes

Lus10004168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.