Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06750 519 / 0 Protein phosphatase 2C family protein (.1.2.3) AT3G51370 407 / 3e-141 Protein phosphatase 2C family protein (.1.2) AT5G66080 405 / 2e-140 Protein phosphatase 2C family protein (.1) AT3G12620 383 / 7e-132 Protein phosphatase 2C family protein (.1.2) AT3G55050 382 / 1e-131 Protein phosphatase 2C family protein (.1.2) AT4G38520 382 / 4e-131 Protein phosphatase 2C family protein (.1.2) AT3G17090 380 / 1e-130 Protein phosphatase 2C family protein (.1.2) AT4G33920 376 / 5e-129 Protein phosphatase 2C family protein (.1) AT5G02760 347 / 6e-118 Protein phosphatase 2C family protein (.1) AT3G16560 144 / 2e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021056 [exp] 760 / 0 AT5G06750 515 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10041861 [exp] 404 / 1e-139 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 396 / 1e-136 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 395 / 3e-136 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 389 / 4e-134 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 388 / 1e-133 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 385 / 2e-132 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019893 [exp] 379 / 1e-130 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 380 / 3e-130 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192600 [exp] 585 / 0 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G045600 [exp] 582 / 0 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.005G108500 [exp] 413 / 2e-143 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 412 / 5e-143 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 405 / 2e-140 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 394 / 7e-136 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 384 / 2e-132 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G214700 [exp] 383 / 1e-131 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G091600 [exp] 378 / 8e-130 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.008G104300 [exp] 377 / 1e-129 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10004170 pacid=23153315 polypeptide=Lus10004170 locus=Lus10004170.g ID=Lus10004170.BGIv1.0 annot-version=v1.0 ATGCTCCTGTCGTGGCTCGCGCGTATAGCTATGGCCTGCTGGAGACCCGTCGTCCGGAGGTACGCCCGCATGAGCAAGGATGACTCCCCCTCCACCTCCG CCGCTGCCGGCAATGACGATCTTGAACTCGGCGGAGGCGGTGGCGGAAGAGATTCGTTGCTGTGGTCTAGGGATTTGGAGAAGCATTCTTGTGGGGAATT CTCTTTCGCCGTCGTTCAAGCCAATGACGTCATCGAGGATCATAGTCAAGTCGAGACCGGCCGGGACTCTGTCTTCGTCGGCGTCTACGACGGCCACGGC GGCCCCGAGGCTTCCCGCTTCATCTCCGACCATCTCTTCAAGCATTTCACCCGGTTTGGTCGAGATTCAGGAACGATCTCGGAGGAGACGCTTAGGCACG CATTCTCAGCGACTGAAGATGGGTTTCTCACTGTAGTGCGTAGGAGTTACGAGATTAAGCCATTGATGGCTGCAATTGGTTCGTGCTGTTTGGCTGGTGT TATATACAGAGGGACTCTGTACGTCGCCAATCTGGGAGATTCCAGAGCTGTGATAGGTTACTTATCTCGACGATCCAAGAAGATCGTCGCTGAGCAGCTG ACGAACGATCACAATGCTAGCATGGAAGAGGTCAGAGCAGAGCTGAAATCCTTGCATCCGGATGACTCCCACATTGTTGTGATGAAGCATGGCGCTTGGC GCATCAAAGGCATTATTCAGGTGTCGAGATCGATAGGCGATGCGTACCTGAAGAGACCGGAGTTTTCGTTGAATCCTTCGTTCCCGCGGTTTCACCTTTC CGAACCGATCAGGCGTCCTGTGCTGACATCGGAGCCGTCGATAGTGTCGAGAGATTTGCAGCCTGAGGACAAGTTTCTCATTTTCGCATCGGATGGGCTG TGGGAGCACATCACTAACCAGGAAGCAGTCGAGATTGTGCACAACAACCAGCGAACCGGGATAGCAAGAAGACTAGTGGAAGCAGCACTGAACAGAGCAT CTGTGAAGAGGGCCATGACTTACCGAGAGCTGAAGAATGTGGAAAGAGGCCAGAGAAGGACCTACCACGATGATATCACTGTGGTTGTCGTCTTCATAGA CCACGAGAACTCGTTGGTACCTGAGATCTCGGTTCGAGGGTTTGTCGACACTGTTGGGCCATCGAATTTTAACCTAGATTCTTGA
AA sequence Show only first row Show all	>Lus10004170 pacid=23153315 polypeptide=Lus10004170 locus=Lus10004170.g ID=Lus10004170.BGIv1.0 annot-version=v1.0 MLLSWLARIAMACWRPVVRRYARMSKDDSPSTSAAAGNDDLELGGGGGGRDSLLWSRDLEKHSCGEFSFAVVQANDVIEDHSQVETGRDSVFVGVYDGHG GPEASRFISDHLFKHFTRFGRDSGTISEETLRHAFSATEDGFLTVVRRSYEIKPLMAAIGSCCLAGVIYRGTLYVANLGDSRAVIGYLSRRSKKIVAEQL TNDHNASMEEVRAELKSLHPDDSHIVVMKHGAWRIKGIIQVSRSIGDAYLKRPEFSLNPSFPRFHLSEPIRRPVLTSEPSIVSRDLQPEDKFLIFASDGL WEHITNQEAVEIVHNNQRTGIARRLVEAALNRASVKRAMTYRELKNVERGQRRTYHDDITVVVVFIDHENSLVPEISVRGFVDTVGPSNFNLDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	1.4	0.8981
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10022557 [exp]	5.7	0.8140
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10014392 [exp]	7.9	0.7727
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	8.9	0.8378
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	10.2	0.8415
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	12.6	0.8634
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	15.3	0.7657
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	16.4	0.8417
AT2G33400			unknown protein		Lus10023739 [exp]	18.8	0.8065
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	23.7	0.8598

Compare expression of checked genes

Lus10004170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.