Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42140 67 / 3e-13 VQ motif-containing protein (.1) AT3G58000 65 / 1e-12 VQ motif-containing protein (.1) AT2G44340 64 / 4e-12 VQ motif-containing protein (.1) AT3G60090 57 / 8e-10 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021054 [exp] 303 / 6e-104 AT2G44340 76 / 7e-17 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192100 [exp] 79 / 1e-17 AT2G42140 86 / 2e-21 VQ motif-containing protein (.1) Potri.016G046000 [exp] 72 / 3e-15 AT3G58000 120 / 1e-34 VQ motif-containing protein (.1) Potri.009G024200 [exp] 64 / 1e-12 AT3G58000 73 / 7e-17 VQ motif-containing protein (.1) Potri.001G230800 [exp] 62 / 6e-12 AT2G44340 79 / 6e-19 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10004172 pacid=23153338 polypeptide=Lus10004172 locus=Lus10004172.g ID=Lus10004172.BGIv1.0 annot-version=v1.0 ATGAAGAAACCAAACAACAGTATTTCACCTGCCGCTGCTCAATCTTCTTCTTCCTCTTCTTCCGCCGTCCCATCTCATCACTGTTCTTCCCCGCCGGGGC TAAGCTTTCACAGAGACTCACGTCCAATCACCAAACCACCACCACCAAGTTCCAACGCTACCGTCAGTAATAATAATAAGAACAAGCCCCCCAAGATCAG AATAATCCACATCTTCGCCCCGGAGATCATCAAGACCGACGTCGCCAACTTCCGCGAGCTCGTCCAGCGTCTCACCGGGAAACCCACTCCCGATCACCAT CACTTCAGCGACAAGAAACAGTTTCCGCCGTCAAATGTAACGGAGCCGTCATACGGCGGACGAATTAGCGACGAAACATACGGCAGGTATCAACAGCGAT GGGCAACCGATGCGGTAACAAAAGCTATAAGTAATGATTTCAGTAGTTATAGCGACGAAATGAATAGTAACTACGGTGGTAGCGGGTTGGTCGGTGGTTC TACTTCTCGATTTGAGTTTGTGGGCAGGATGGTTAAGGAGGAAGATGAAAACCAGGTGGCGTGGGTTGATAATGACGGGAGAAATAGTGACAGCGTCTTT GGAATTAACGACCGGCGGAGTACTGCTGAGTATTTTGAGGAGATTGATGGGTTTATTCAAGAGCTTGGAGGTGATCATCAGTTCCCGTTGATGGAACCGA GTTTTCACTACCAGCAACGTAATAATATTAATACTTACGGAAGCCATCATCAGCTTCATCTTCTTCACGGATTTGGGGAAGCTACTCATCAGTTCGCCTG A
AA sequence Show only first row Show all	>Lus10004172 pacid=23153338 polypeptide=Lus10004172 locus=Lus10004172.g ID=Lus10004172.BGIv1.0 annot-version=v1.0 MKKPNNSISPAAAQSSSSSSSAVPSHHCSSPPGLSFHRDSRPITKPPPPSSNATVSNNNKNKPPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTPDHH HFSDKKQFPPSNVTEPSYGGRISDETYGRYQQRWATDAVTKAISNDFSSYSDEMNSNYGGSGLVGGSTSRFEFVGRMVKEEDENQVAWVDNDGRNSDSVF GINDRRSTAEYFEEIDGFIQELGGDHQFPLMEPSFHYQQRNNINTYGSHHQLHLLHGFGEATHQFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	0	1
					Lus10004442 [exp]	2.4	0.9237
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10041280 [exp]	5.0	0.8847
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	7.1	0.8655
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	9.1	0.9155
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	9.3	0.9148
					Lus10023006 [exp]	12.0	0.8713
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	16.0	0.8662
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10027736 [exp]	19.0	0.8815
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	21.5	0.8375
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	21.9	0.8631

Compare expression of checked genes

Lus10004172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.