Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 387 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 300 / 1e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 233 / 3e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 217 / 2e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 215 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 199 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 191 / 9e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G09450 139 / 6e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 127 / 6e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021053 [exp] 736 / 0 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 308 / 1e-100 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 234 / 1e-71 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009787 [exp] 226 / 2e-68 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 220 / 2e-67 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024781 [exp] 217 / 5e-65 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 211 / 6e-63 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 201 / 2e-59 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 200 / 6e-59 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119000 [exp] 451 / 3e-156 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 432 / 8e-149 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 324 / 8e-107 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 317 / 4e-104 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 248 / 9e-77 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 239 / 1e-73 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 229 / 4e-70 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G051500 [exp] 222 / 3e-67 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 215 / 9e-65 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 203 / 4e-60 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004173 pacid=23153332 polypeptide=Lus10004173 locus=Lus10004173.g ID=Lus10004173.BGIv1.0 annot-version=v1.0 ATGGAGTGGATGGAGAAGAGAGGAATAAATCTCGGCCATGGCGATTTAGCAGTACGTCTGGATCTCATCTGTAAAACCAAAGGGATAACGGAGGCCGAGA ATTACTTCAACGGACTAATTCCGTCGGCGAAGAATCCAGCTACGTACGGATCTCTACTGTGCTCCTACTGCAGAGAGCTGGATTCCGAGAAGGCGCTGCA GCTCTTCCAGAAAATGGACGAATTGACGTTCATTCAAAACTCGTTACCTTTCAACAATCTGATGCGTATGTACATGAGGTTGGGCCAGCAGGAGAAGGTG CCTGAACTCGTGAACCAGATGAAGCAGATGAATCTCACTCCCTGCACGTTCACTTACGACATCTGGGTACAGAGCCTCGGCCATATGAAAGATTTAGAAG GAATCGAGAAGGTGCTCGAAGAGATGGGAAAAGACGTCAACCTAAGTAGCAATTTCAACTGGACTACTTACAGCAACTTGGTAGCAGGCTACACCAGTGC CGGAGAATTCGAGAGGGTGAAATCGGCTCTCAAGATGATAGAGGAACGGATCGATACTCACAACCGGAACGCGTATCATTTCCTGCTAACTTTGTACGGC GTGATCGCCGATCTGGAAGAAGTTCACCGCGTTTGGGGGAAACTGAAGGCAAAGTTTAATCAGGTCACGAACGCGAGTTACCTCGTAATGCTTCAAGTCC TGACGAGGCTGAAAGATGCCGAGGCCTTATCGAAGGTGTTCGAAGAGTGGGAATCGGTCTGCACCAGTTACGATATGAGGGTGGCGAATATTGCGATAGG GGCGTACCTGGAGCGGGGAATGTTCGATGAAGCCAAGGCGGTTTTCGATGGCGCGATGGAGAGGACTCCCGGACCGTACTTCAAGGCACGGGAGATGCTC ATGATCTCGTTGGTGAAGAGGGGCCGGTTGGAACCGGCGTTGAAGCAGCTGAAGGCGGCTTTCACGGAGGTTGGCCGGACCGGGAAGAGGCACAAGGAGT GGCGGCCCAGCGCGGAAATTGTGGATACATTCTTTGGTTATTTCGAGGAAGAGAAAGATGTCGAGGGAGCTGAGAAGATGTACAAGATTCTGAAGCTCAT AAACCGCTGCGACTCTACTGTCTATAGGCTGGGGGGGGGGGATTATGCAGCTGCTGGGAAATCGGCTAACGATATGCGTTCGAGGCTGGAGGAAGATGCC GTCGAAGTGGACGAGGAGATTCAGAGGTTGCTTGATGTGGTATGCCCTGAATAA
AA sequence Show only first row Show all	>Lus10004173 pacid=23153332 polypeptide=Lus10004173 locus=Lus10004173.g ID=Lus10004173.BGIv1.0 annot-version=v1.0 MEWMEKRGINLGHGDLAVRLDLICKTKGITEAENYFNGLIPSAKNPATYGSLLCSYCRELDSEKALQLFQKMDELTFIQNSLPFNNLMRMYMRLGQQEKV PELVNQMKQMNLTPCTFTYDIWVQSLGHMKDLEGIEKVLEEMGKDVNLSSNFNWTTYSNLVAGYTSAGEFERVKSALKMIEERIDTHNRNAYHFLLTLYG VIADLEEVHRVWGKLKAKFNQVTNASYLVMLQVLTRLKDAEALSKVFEEWESVCTSYDMRVANIAIGAYLERGMFDEAKAVFDGAMERTPGPYFKAREML MISLVKRGRLEPALKQLKAAFTEVGRTGKRHKEWRPSAEIVDTFFGYFEEEKDVEGAEKMYKILKLINRCDSTVYRLGGGDYAAAGKSANDMRSRLEEDA VEVDEEIQRLLDVVCPE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	0	1
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	2.2	0.9288
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	3.2	0.9171
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	3.5	0.9237
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	5.8	0.8873
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	6.2	0.9247
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	6.2	0.9250
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	6.3	0.9097
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	7.9	0.9106
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10040869 [exp]	9.6	0.8362
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	9.6	0.8818

Compare expression of checked genes

Lus10004173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.