Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66654 241 / 1e-80 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G47320 189 / 3e-60 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 99 / 2e-23 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 93 / 2e-23 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 75 / 1e-16 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 76 / 8e-16 ATPUB49 plant U-box 49 (.1) AT5G13120 72 / 6e-15 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G15790 71 / 2e-14 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT2G16600 65 / 8e-13 ROC3 rotamase CYP 3 (.1.2) AT4G34870 64 / 2e-12 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021052 [exp] 393 / 1e-140 AT3G66654 282 / 1e-96 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10016265 [exp] 342 / 1e-120 AT3G66654 260 / 4e-88 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10012005 [exp] 320 / 3e-111 AT3G66654 259 / 5e-87 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10006271 [exp] 102 / 9e-25 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10020573 [exp] 102 / 9e-25 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 79 / 4e-18 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 79 / 6e-18 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020992 [exp] 79 / 5e-17 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 79 / 7e-17 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105800 [exp] 272 / 1e-92 AT3G66654 306 / 2e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.010G144500 [exp] 254 / 5e-86 AT3G66654 311 / 2e-108 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G194250 [exp] 141 / 1e-41 AT2G47320 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 98 / 2e-23 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 92 / 4e-23 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 72 / 1e-15 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 72 / 9e-15 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.004G144300 [exp] 71 / 3e-14 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.001G060200 [exp] 70 / 3e-14 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.005G148900 [exp] 71 / 4e-14 AT5G67530 806 / 0.0 plant U-box 49 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10004174 pacid=23153308 polypeptide=Lus10004174 locus=Lus10004174.g ID=Lus10004174.BGIv1.0 annot-version=v1.0 ATGGCGAGGATCAAACCTCAAGCTCTGCTGCAGCAGAGCAAGAAGAAGAAACAACCGAGCCGGATAAGCGCCACGCCTATTCTCTTTGGCGGCTTGATCG TCCTTATAGCTCTGTTCTTCCTCTACTCCACCTACACGCACCGCTCCATAAGGTCTAGCATCCAGAACAGTAATGCTAACTCGGGATTTGAGGATGGCAG TATGATGTCTGATTTGAAGAAATCCGATGTCCCTGGATACGTTATCTTTACGACATCAAAAGGACCTGTAACTGTGGAACTCTACAAAGATAGCTCTCCT GAAATTGTTGACAAGTTCATTGACTTATGCCAAAAGGGGCATTTCAAGGGGATGCAATTTGTTCGTGTGATAAAGCATTACGTGATTCAAGCAGGGAGCA CTGATAATCTAGGAAATACAGAGGATTGGACTGTGAAAGGGAAGCACCATGGGCAGCTTCATTCAAGCATGAAACACGAGGCTTTCATGGTCGGAACTTC CAATGGAAAACACGATGACAAAGGATTTGATCTGTTCATCACAACTGCGCCAATCCCAGATCTAAGTGAGAAGCTGGTTGTTTTCGGACGGGTCGTTAAG GGTGAAGATGTCATTCAGGAAATCGAAGAGGTGGATACGGATGAACGCTATCGGCCGAAGAGTCAAATAGGGATTATCGGTGTTACTCTGAAACAGAAGG CTTAA
AA sequence Show only first row Show all	>Lus10004174 pacid=23153308 polypeptide=Lus10004174 locus=Lus10004174.g ID=Lus10004174.BGIv1.0 annot-version=v1.0 MARIKPQALLQQSKKKKQPSRISATPILFGGLIVLIALFFLYSTYTHRSIRSSIQNSNANSGFEDGSMMSDLKKSDVPGYVIFTTSKGPVTVELYKDSSP EIVDKFIDLCQKGHFKGMQFVRVIKHYVIQAGSTDNLGNTEDWTVKGKHHGQLHSSMKHEAFMVGTSNGKHDDKGFDLFITTAPIPDLSEKLVVFGRVVK GEDVIQEIEEVDTDERYRPKSQIGIIGVTLKQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10004174 [exp]	0	1
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10020967 [exp]	2.4	0.8805
AT4G17250			unknown protein		Lus10028936 [exp]	7.3	0.8752
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10021946 [exp]	12.5	0.8518
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	14.7	0.9058
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	15.4	0.8867
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	15.7	0.9014
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	21.2	0.8638
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	23.6	0.8810
					Lus10027011 [exp]	26.9	0.8469
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	30.3	0.8589

Compare expression of checked genes

Lus10004174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.