Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 611 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 201 / 7e-61 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 202 / 1e-60 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 193 / 2e-57 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 79 / 7e-16 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021051 [exp] 767 / 0 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 551 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 548 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 544 / 0 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 523 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 520 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 512 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 509 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 498 / 2e-177 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 640 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 640 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 589 / 0 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 557 / 0 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 519 / 0 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 206 / 1e-62 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 205 / 7e-62 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 202 / 2e-60 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 201 / 5e-60 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 198 / 4e-59 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10004175 pacid=23153327 polypeptide=Lus10004175 locus=Lus10004175.g ID=Lus10004175.BGIv1.0 annot-version=v1.0 ATGGGTGCTGGTGGAAGAATGGCTGTGCCTCCATCGAACAAGGCGGACTCGGAAACCTTTAAGCGGTCTCCATACTCAAAACCTCCATTCACACTTGGTG AGATCAAGAAAGCCATCCCTCCACATTGCTTCAAAAGGTCCATCCCCCGCTCATTCTCCTATGTGGCTTATGACCTCACCATTGCCGCCATCTTCTACTA CATCGCCACCACTTACATCCACCTCCTCCCCAATCCTCTCTCCTACGTTGCGTGGCCGATCTACTGGGCCTGCCAAGGCTGCGTCCTCACCGGTGTCTGG GTCCTAGCCCACGAATGCGGTCACCACGCCTTCAGCGACTACCAATGGCTTGATGACTTGGTCGGCTTTGTCCTTCACTCATGCCTCATGGTCCCCTACT TCTCGTGGAAGCACAGCCACCGTCGCCACCACTCCAACACCGGGTCCCTTGAACGAGATGAGGTTTTCGTCCCCAAGCAGAAATCGGCCATCGGCTGGCA CTCAAAGTACCTCAACAATCCACCTGGCCGTGTGCTCACACTTGCAGTCACTCTCACTCTCGGCTGGCCTTTATACTTGGCATTCAACGTTTCCGGAAGG CCGTACGACCGGTTCGCCTGCCATTACGATCCTAAATCCCCTATCTATAACGACCGCGAGCGAACTGAGATCTTCCTCTCCGATGCCGGCATCCTTGCTG TGAGCTTTGCACTCTACAAGCTTGCTGTCGCCAAGGGACTGGCTTGGGTGGTTTGTGTCTATGGAGTTCCACTCCTTGTAGTGAATGGATTTCTTGTCTT AATCACTTTCTTGCAGCACACCCACCCATCATTGCCGCACTACAAATCCTCCGAATGGGACTGGCTGAGAGGTGCTCTGGCGACCATGGACAGAGACTAC GGGTTTCTGAACACGGTGTTCCATAACATCACAGATACCCATGTGGCGCATCACCTGTTCTCGACGATGCCTCATTACCATGCGATGGAAGCTACCAAGG CGATCAAGCCGGTATTGGGAGAGTACTACCAGTTCGATGGGACTCCATTCATCAAGGCGATGTGGAGGGAGGCTAAGGAGTGTGTCTATGTTGAGCCTGA CGAAGGTGACCAGAACAAAGGCGTGTTCTGGTACAACAACAAGCTGTGA
AA sequence Show only first row Show all	>Lus10004175 pacid=23153327 polypeptide=Lus10004175 locus=Lus10004175.g ID=Lus10004175.BGIv1.0 annot-version=v1.0 MGAGGRMAVPPSNKADSETFKRSPYSKPPFTLGEIKKAIPPHCFKRSIPRSFSYVAYDLTIAAIFYYIATTYIHLLPNPLSYVAWPIYWACQGCVLTGVW VLAHECGHHAFSDYQWLDDLVGFVLHSCLMVPYFSWKHSHRRHHSNTGSLERDEVFVPKQKSAIGWHSKYLNNPPGRVLTLAVTLTLGWPLYLAFNVSGR PYDRFACHYDPKSPIYNDRERTEIFLSDAGILAVSFALYKLAVAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPSLPHYKSSEWDWLRGALATMDRDY GFLNTVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPVLGEYYQFDGTPFIKAMWREAKECVYVEPDEGDQNKGVFWYNNKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	0	1
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	1.4	0.8639
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	2.8	0.8607
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	3.0	0.8406
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10019671 [exp]	3.2	0.8513
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10022433 [exp]	3.6	0.8232
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	4.0	0.8545
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	6.0	0.8550
AT4G01400			unknown protein		Lus10002675 [exp]	6.9	0.8001
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	7.1	0.8315
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	9.8	0.8430

Compare expression of checked genes

Lus10004175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.