Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 516 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 222 / 3e-69 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 220 / 1e-67 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 210 / 5e-64 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 96 / 2e-21 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021050 [exp] 719 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 574 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 573 / 0 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 566 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 558 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 555 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 548 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 535 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 531 / 0 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 548 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 540 / 0 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 537 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 515 / 0 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 445 / 2e-157 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 227 / 4e-71 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G117500 [exp] 228 / 2e-70 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 225 / 2e-69 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 221 / 7e-68 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 220 / 2e-67 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10004176 pacid=23153307 polypeptide=Lus10004176 locus=Lus10004176.g ID=Lus10004176.BGIv1.0 annot-version=v1.0 ATGCCGCCGCCGCCTTCATCATCCAACACAACCATGAAGCGATCGCCACACTCAAAGCCGCCGTTCACCCTCTCTGACATCAAGAAAGCCATACCACCGC ACTGCTTCCAAAGGTCCCTCCTCCGATCATTTGCCTACTTAGCCTACGACCTCACCGCCGTCACAATCCTCTACCACATCGCCACCACGTACTTCCACCT CCTCCCGACACCTCTCTCATCCTACGTGGCTTGGCCGGCCTACTGGGCCAGCCAAGGCTGCTTCTTCGTCGCTGTATGGATGGTGGCCCACGAGTGCGGT CACCACGCCTTTAGCGACCAACACTGGCTGGAAGACTCGGTAGGGTTCATCCTCCACTCGGCCCTCCTTTCGCCTTACTTCTCGTGGAAGCACAGCCACC GCCGCCACCACGCCAACACGAGTTCCCTCGAGCGTGACGAGGTGTTCGTCCCTAAGCTGAAATCCAAGCTGAGCTGGCACTTCAAGTTCTTCAATAACCC GCCTGGCCGCGTCCTGCAGCTGGCCTTTGCTCTGCTTCTAGGATGGCCTCTCTACCTTGCGGTCAACATCGCAGGAAGACCGTACGAGAAATTCGCTAGC CACTTCGATCCGCGAAGCCCTATCTATAACGATCGGGAGCGAATTGAGATATTTGTATCTGATGTTGGCGTGCTTGCTATGTGGTTCGCTCTGTATAAAC TTGCCCTGACGAACGGAGTTGGTTGGGTTGTTTGTGTGTACGGGGTCCCTCTGTTGGTGATGAATGGATGGATCGTTACGATCACTTACTTGCATCACAC GCATGTCGCATTGCCGCGGTATGATTCCTCGGAGTGGGATTGGTTGAGGGGTGCGCTCGCGACTGTAGATAGGGATTATGGGGTTTTGAACAAGGTGTTT CACAACATTACAGATACTCATGTGGCGCACCATCTGTTTTCGACGATGCCTCATTACCATGCGGCGGAAGCAACCGAAGCGATCAAGCCCGTTTTGGGTG AGTATTATCGGTCTGACCGGACTCCTATCGCCAAGGCATTATGGAGGGAGACTAAGCACTGTGTCTATGTCGAGGTTGATGAAGATAAAGGCGTGTTGTG GTTCAATGATAAGATATGA
AA sequence Show only first row Show all	>Lus10004176 pacid=23153307 polypeptide=Lus10004176 locus=Lus10004176.g ID=Lus10004176.BGIv1.0 annot-version=v1.0 MPPPPSSSNTTMKRSPHSKPPFTLSDIKKAIPPHCFQRSLLRSFAYLAYDLTAVTILYHIATTYFHLLPTPLSSYVAWPAYWASQGCFFVAVWMVAHECG HHAFSDQHWLEDSVGFILHSALLSPYFSWKHSHRRHHANTSSLERDEVFVPKLKSKLSWHFKFFNNPPGRVLQLAFALLLGWPLYLAVNIAGRPYEKFAS HFDPRSPIYNDRERIEIFVSDVGVLAMWFALYKLALTNGVGWVVCVYGVPLLVMNGWIVTITYLHHTHVALPRYDSSEWDWLRGALATVDRDYGVLNKVF HNITDTHVAHHLFSTMPHYHAAEATEAIKPVLGEYYRSDRTPIAKALWRETKHCVYVEVDEDKGVLWFNDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004176 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	6.5	0.7971
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	12.0	0.8357
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	14.1	0.8048
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	35.8	0.7916
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	37.5	0.7916
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	45.7	0.7821
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031189 [exp]	66.9	0.7708
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	68.1	0.7552
					Lus10039654 [exp]	69.9	0.7211
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	72.7	0.7560

Compare expression of checked genes

Lus10004176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.