Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 452 / 3e-159 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 186 / 3e-55 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 186 / 2e-54 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 173 / 7e-50 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 70 / 8e-13 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021049 [exp] 650 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 587 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 529 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 523 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2) Lus10004181 [exp] 523 / 0 AT3G12120 494 / 1e-175 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 516 / 0 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 506 / 2e-180 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 503 / 2e-179 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 483 / 1e-171 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 476 / 2e-168 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 470 / 3e-166 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 446 / 3e-156 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 432 / 2e-151 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 365 / 5e-126 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.008G069600 [exp] 189 / 1e-55 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 187 / 5e-55 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 185 / 7e-55 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G101500 [exp] 183 / 1e-53 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 180 / 2e-52 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10004177 pacid=23153303 polypeptide=Lus10004177 locus=Lus10004177.g ID=Lus10004177.BGIv1.0 annot-version=v1.0 ATGGTATCCAATACCACCCTAAAGCGAACACCGACCACAAAACCGCCGTTCACCCTCTCCGACCTCAAGAAAGCAATACCACCACACTGCTTCCAAAGAT CCCTCCTCAAATCCTTCTCCTACCTAGCCTACGACCTCACCGTCATCACAATCCTCTACCACATCGCCACGTCATACTTCCACCTCCTTCCCAAACCTCT CTCCTACGTGGCCTGGGTGGCCTATTGGGCCGCTCAGGGGTCCCACTTCATCGCCGTGTGGGTCATCGCCCACGAGTGCGGCCACCACGCCTTCAGCGAC TACCAGTGGCTAGACGACGCCGTCGGCTTCCTTCTCCACTCCCTCCTCTTAGCTCCTTACTTCTCCTGGAAGCACAGCCACCGCCGCCACCACGCCAACG CCGCCTCCATCGAACGTGACGAGAATTACATCCCGAGAAAGAAGGACGAAGTCAACTGGCATTTTAAGTACCTTGATAACCCTCCCGGACACGTGTTCTA TATATTCTTCACTCTCACCCTCGGATGGCCGCTCTACTTGCTGGTCAACATCTCCGGGAGGAAATACGACGACGGATTCGCCAGCCATTTGTATCCTTTC TCCCCGATCTACAACGATCGGGAGAGGTTCGGGGTGTTCCTCTCCGTCGCGGGGATGCTCGCCACGTGGTTCGGACTTTATAAGCTCGCAATGGTCAACG GTCTCGGCTGGGTTGTTTGCGTGTACGGGGTCCCTCTGATTCTCCAGAATGCGATGTTGATTACCATCACTTACTTGCACCACACGCATCTCAACCTGCC CCACTACGACTCGTCGGAGTGGGACTGGATGCGGGGTGCGCTCGCGACTGTGGATAGGGACTACGGGATTTTGAACAAGGTAATGCATAATATTACGGAT ACTCACGTGGCACACCATCTGTTTTCGATGATTCCTCATTACCATGCGATGGAGGCTACGAATGCGATCAGGCCGGTTCTGGGGGAGTACTACCAGGCCG ATACGACGCCGTTTATTAAGGCGTTGTGGAGGGAGACTAAGGACTGTGTTTATGTTGAGGCGGATGATGAGGGCGGTGATCAGGAGAAGAAAGGAGGGGT GTTCTGGTTCAAAACCAAACTGTGA
AA sequence Show only first row Show all	>Lus10004177 pacid=23153303 polypeptide=Lus10004177 locus=Lus10004177.g ID=Lus10004177.BGIv1.0 annot-version=v1.0 MVSNTTLKRTPTTKPPFTLSDLKKAIPPHCFQRSLLKSFSYLAYDLTVITILYHIATSYFHLLPKPLSYVAWVAYWAAQGSHFIAVWVIAHECGHHAFSD YQWLDDAVGFLLHSLLLAPYFSWKHSHRRHHANAASIERDENYIPRKKDEVNWHFKYLDNPPGHVFYIFFTLTLGWPLYLLVNISGRKYDDGFASHLYPF SPIYNDRERFGVFLSVAGMLATWFGLYKLAMVNGLGWVVCVYGVPLILQNAMLITITYLHHTHLNLPHYDSSEWDWMRGALATVDRDYGILNKVMHNITD THVAHHLFSMIPHYHAMEATNAIRPVLGEYYQADTTPFIKALWRETKDCVYVEADDEGGDQEKKGGVFWFKTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	0	1
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	2.2	0.9110
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	5.8	0.8797
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	6.9	0.8729
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10036574 [exp]	9.2	0.8260
					Lus10001144 [exp]	16.9	0.8274
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	18.1	0.8447
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004178 [exp]	19.8	0.7705
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	24.8	0.8466
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	25.1	0.8659
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	31.9	0.8398

Compare expression of checked genes

Lus10004177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.